Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4007
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 143 7e-35
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.43
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.43
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.43
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.43
AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical ... 28 4.0
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 5.3
AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical ... 28 5.3
Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical pr... 27 9.2
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 27 9.2
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 143 bits (347), Expect = 7e-35
Identities = 63/87 (72%), Positives = 75/87 (86%)
Frame = +1
Query: 7 RIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAI 186
R+ VR+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI
Sbjct: 42 RVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAI 101
Query: 187 VVVDATPFRQWYESHYTLPLGRKEGSE 267
+ VDA PFRQWYE+HY LPL RK+ ++
Sbjct: 102 ISVDAAPFRQWYEAHYALPLARKKNAK 128
Score = 116 bits (278), Expect = 2e-26
Identities = 55/88 (62%), Positives = 70/88 (79%)
Frame = +2
Query: 245 LGGKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 424
L KK AKL+E + AI+NKKRS T +KY RQ+ A V+ L EQF+TGRLLA ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180
Query: 425 QCGRADGYILEGKELEFYLRKIKSKRAK 508
Q G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 181 QVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 52 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 156
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AC006617-1|AAF39770.2| 397|Caenorhabditis elegans Hypothetical
protein C39B5.6 protein.
Length = 397
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 82 WGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKEG 261
WG+ + I ++ A N E+ R ++KN V + T R T+ + KE
Sbjct: 123 WGTRTEIKNMNSIRTIHTAINYEIARQFEILKNGGAVQNET--RAADSEGRTVSMRDKET 180
Query: 262 SETD 273
ETD
Sbjct: 181 EETD 184
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 155 TNSLLDALYTTSMIRVLRV 99
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>AL117205-7|CAB55160.1| 293|Caenorhabditis elegans Hypothetical
protein Y116A8A.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 94 CSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 216
CS + I ++A+NN ++ KT N I TPF Q
Sbjct: 51 CSIQNLMYIQKRFSANNNMIIALKTDTINEITESVCTPFEQ 91
>Z29115-3|CAA82361.1| 347|Caenorhabditis elegans Hypothetical
protein T26G10.4 protein.
Length = 347
Score = 27.5 bits (58), Expect = 7.0
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 236 RCLLGGKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVAS 415
+ ++ KK A L +A E N+K + K + R +V AL+ +FHT +L+ S
Sbjct: 251 KIVVKNKKLAVLVQATEDS-NEKLFTEDGVKKMQRAMNEQVSRALKHRFHTTKLVKSEIS 309
Query: 416 RPGQCGRADG-YILEGKELEFYLRKIKSK 499
R Q A ++ G L + K
Sbjct: 310 RVVQMHPASNKFVARGGNLSLACHRFVHK 338
>Z93396-3|CAB07712.1| 597|Caenorhabditis elegans Hypothetical
protein ZC15.5 protein.
Length = 597
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 384 WNCSSRAPSTLARRCLA 334
W C +RAP+T+ RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 254 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 376
K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 425 KSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,938
Number of Sequences: 27780
Number of extensions: 223518
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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