Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4005
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    33   0.044
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    33   0.058
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    30   0.41 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    29   0.72 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    28   1.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   3.8  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    27   3.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.0  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    26   6.7  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   6.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   8.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.8  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.8  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   8.8  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 569 DNEGEERQLKSVPSLQTEDTDSQGDE-GHGLEQNEHQDGDDDFLELS 432
           D E E+ +  S+ S Q ED ++   E     E N   D DD+FL  S
Sbjct: 74  DVENEDEEEDSITSFQDEDDETSHQELSDNSEMNNRDDADDEFLGFS 120


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
 Frame = +3

Query: 252 STGDFFDGVENYIQSHDVTFKLP---IADTQITVS--PRNLDNDELTLNVKFNKEGARSV 416
           S GDF+D +   + S+  T+ +P   + +  + ++    +L++ + TLN + N+E   S+
Sbjct: 73  SMGDFYDDIRLMV-SNAQTYNMPGSLVYECSVLIANTANSLESKDGTLNEEENEEMESSI 131

Query: 417 GEARKAKLKKIIVPILVFVLLKAM 488
            E  K    +I VP ++  +L A+
Sbjct: 132 NEEHKPGTNEIDVPKVIQNILDAL 155


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 617 DLGKLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQGDEGHGLEQNE 468
           D  KL AK E      D  G  ++ K  P+L+ + T+ + D      +NE
Sbjct: 75  DTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENE 124


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 590 EDSQSHGDNEGEERQLKSVPSLQTEDTDSQGDEGHGLEQNEHQD 459
           +D +S   +E  ER  + V   + ED D   DEG   ++NE+ +
Sbjct: 233 KDDESSSGSESYERD-EDVDEEEEEDDDENNDEGDDEDENENDE 275


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 168 SIFKKDTFQISDVVEVTKNGAGNDVTGRSTGDFFDGVENYIQSHDVTFKLPIADTQITVS 347
           S F+ D   I + +    +   N +  R +GDF +         D+   LP+ D  + V 
Sbjct: 196 STFQPDVTAIREQLSRCLDHIINSLGTRVSGDFDEDFPTGTVFFDLESHLPLLDVALPVL 255

Query: 348 PRNLDNDE 371
           P++ D+ E
Sbjct: 256 PKSSDSSE 263


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = -3

Query: 617 DLGKLLAKLEDSQSHGDNEG--EERQLKSVPSLQTE 516
           ++ KL AKLE+SQ H D+    +ER L+   +L+T+
Sbjct: 665 EVPKLEAKLEESQQHYDSFTILDERPLEEYHTLKTQ 700


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 559 EKKDS*RAFQAFRPRTPIAK 500
           EK+DS R    FRPR P AK
Sbjct: 515 EKQDSYRMLDGFRPRLPKAK 534


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 30   VAAQPAKDAFWKGTPMDSMVEE--MRSGCAEGSDPTACIKYKVMSLLDSIFKKDTFQISD 203
            VA   A+D    G  + + + E  +     E     +  K K + LL    +K   + +D
Sbjct: 1292 VARDVAEDTKSLGKELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQAD 1351

Query: 204  VVEVTKNGAGNDVTGRSTGDF 266
            VV  T +G+G+D+   S+ +F
Sbjct: 1352 VVCATLSGSGHDLVAHSSLNF 1372


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 262 SPVDRPVTSLPAPFFVTSTTSEIWKVSFLKME-SSSDMTL 146
           +P+D    +  A F+ +STT  + +++F   E SS D TL
Sbjct: 120 TPIDSSTPTKTATFYTSSTTENLDELNFSTEELSSFDTTL 159


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 590  EDSQSHGDNEG--EERQLKSVPSLQTEDTDSQGDEGHGLEQNEHQDGDDDFLE 438
            +D+ S  D+    E      V S+  ED D+QG+E    +++    G +D L+
Sbjct: 1908 QDASSQNDDSSFDEASSHGDVISIDEEDLDNQGEEFEWEDEDNASSGYEDELD 1960


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = -3

Query: 623 GRDLG-KLLAKLEDSQ-----SHGDNEGEERQLKSVPS--LQTEDTDSQGDEGHGLEQNE 468
           G DL   LL+   DS+     S  D E  E+Q+ S  S  ++ +          GL+  E
Sbjct: 475 GEDLEIPLLSDYSDSENISEKSSDDEEAFEKQVTSSYSSPIKVKSQGKSSKGSSGLDVRE 534

Query: 467 HQDGDDD 447
           H+  DDD
Sbjct: 535 HEGSDDD 541


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 38  ATSQGCLLEGNPYGQHGRGDEVRLRRRIRPNCL 136
           A  Q  L+EG  Y +HG          +R NC+
Sbjct: 356 AEIQSLLIEGKYYAEHGSKTTAMQTNFVRTNCM 388


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 464 GVRSAQGHDPHPLGYRCPRSEGLERS-SAVFLLLRCLRGSGYLPALQEVYPD 616
           G R   G DP  + +    S   E S SAV  L +      ++P+L+EVY D
Sbjct: 644 GKRIFFGSDPVCISFAKVASSSSESSHSAVDGLNKAFSNVSFVPSLREVYDD 695


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 483 AMTLIPLAIGVLGLKAWNALQLSFFSFVVSVAL 581
           A  ++ L +G    + W+ +Q+  + FVVS+ +
Sbjct: 478 ASIIVSLGLGFAFTEGWHDIQIRSYGFVVSMVI 510


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/57 (22%), Positives = 20/57 (35%)
 Frame = -3

Query: 623 GRDLGKLLAKLEDSQSHGDNEGEERQLKSVPSLQTEDTDSQGDEGHGLEQNEHQDGD 453
           G D     +  E   S  DN+       S     +ED+DS         ++  +D D
Sbjct: 215 GSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSD 271


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = -1

Query: 280 STPSKKSPVDRPVTSLPAPFFVTSTTSEIWKVSFLKMESSSDMTLYFMQAVGSDP--SAQ 107
           ST S  SP      SLP P    +  +  +  S      +    LYF+      P     
Sbjct: 446 STASTSSPFSYYPESLPTPLLGRAVNTTAFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505

Query: 106 PDLISSTMLSIGVP 65
           P +++ST +S+G P
Sbjct: 506 PGILTST-ISLGQP 518


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 569 DNEGEERQLKSVPSLQTEDTDSQGDEGHGLEQNEHQDGDDDFLELS 432
           ++EG  + LKS P  QT D ++  +  +G   N     ++ F + S
Sbjct: 63  NDEGNNKLLKSSPKAQTRDENTPSEFKNGGFSNRESMSENCFSKSS 108


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 181 FLKMESSSDMTLYFMQAVGSDPSAQPDLISSTM 83
           F K  + S + L+ + ++ SDP + P + SST+
Sbjct: 106 FAKSRNESSLKLWDLNSLLSDPKSSPLMQSSTL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,047,841
Number of Sequences: 5004
Number of extensions: 63170
Number of successful extensions: 229
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)