Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4002
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    28   1.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.3  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   4.4  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 369 TSYRSHYFYQLSSYRSIIPGDVTVVFFPL 283
           T Y SH F+ L  Y   +P  +   FFPL
Sbjct: 193 TPYSSHAFHYLDGYSQSLPYHMFPFFFPL 221


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 41   GAFRTLKHWSRRTCRLLTHRHSPLSF 118
            GA +TLK  SR    L   +H+PLS+
Sbjct: 4153 GALQTLKKTSRMLINLAKQQHTPLSW 4178


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = -2

Query: 395 LCISRDVLPRA---IEAIISTSSLHTGALYL 312
           LCI  D+LP++   +E ++ST+S+   A Y+
Sbjct: 11  LCIEEDLLPKSLDVLEYLLSTTSIPIPACYI 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,854
Number of Sequences: 5004
Number of extensions: 57773
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)