Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4001
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    81   2e-16
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    57   3e-09
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   3.1  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    27   3.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.1  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   9.3  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   9.3  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 37/64 (57%), Positives = 48/64 (75%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGVL 619
           M G+FLH++ADT+GSVGVIVS IL+Q F W   DP+ S+ IA LI  SV+PL++DSA  L
Sbjct: 583 MHGIFLHIIADTMGSVGVIVSTILIQWFSWTGFDPLASLIIAALIFVSVLPLIKDSAKNL 642

Query: 620 MQRT 631
           +  T
Sbjct: 643 LSVT 646



 Score = 32.7 bits (71), Expect = 0.047
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +2

Query: 251 QVKHERLLVVSVLGFLVNLVGIYAF 325
           Q+  ++LL+VS LG +VNLVGI AF
Sbjct: 447 QMNTDQLLLVSFLGLVVNLVGILAF 471


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQ--TFGW-MRADPICSMAIALLIAASVIPLVRDSA 610
           M GVFLHVL D LG++GVI +A+ ++   + W    DP  S+ +  +I  S IPL + +A
Sbjct: 230 MHGVFLHVLGDALGNIGVISAALFIKYTDYSWRFLFDPCISILLTFIILFSAIPLCKSAA 289

Query: 611 GVLMQRTPTSL 643
            +L+Q  P S+
Sbjct: 290 LILLQVAPQSI 300


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 576 AIRSAIAIEQIGSARIHPNVCMRMADTMTPTEP 478
           ++ SA  ++Q+  AR+ PNV   ++  +  T P
Sbjct: 451 SLSSATTLQQLPKARVTPNVLSSLSSNLGKTNP 483


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 422 GAGSAIMRGVFLHVLADTLGSVGVIVSAILMQTFG-WMRADPICSMAIALLIAASVIPLV 598
           GAG+  +  +  HV  +   ++GVI++ IL  T   W          +AL+  A++IPLV
Sbjct: 388 GAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALV--ATIIPLV 445


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 210 NFKMTK*NNFYFTFR*NMSVCWLY 281
           +FK++  ++ +F+FR  + +CW Y
Sbjct: 575 SFKVSDVDDSHFSFRSQILICWCY 598


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 89   ISNY--WQNHFKINRLKSMLRNGLRFNYNS 172
            ISN+  W N+F +N     LRN ++F Y+S
Sbjct: 1056 ISNWDEWNNYFDLNTYADSLRN-VQFPYSS 1084


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 205 LRLLHYQAVLATIVVKTKAVPQHRF*PIYFEMVLPIVTYLQPFIFH 68
           L   H   +L  + V    + +H F  I++ + +PI  YL  F  H
Sbjct: 234 LAAFHLWNLLGDLSVPMYRIVKHLFSYIFYLIGVPITVYLAVFAVH 279


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 298 REPGGHIRVPPRSWTRPWSLP 360
           R+P   +R  PR W R   LP
Sbjct: 214 RDPSDRVREEPREWVRRGPLP 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,365
Number of Sequences: 5004
Number of extensions: 37193
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)