Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4001
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0707 - 20212190-20214592                                         94   7e-20
05_01_0214 - 1615519-1616775                                           46   2e-05
03_01_0059 + 484305-484617,484919-485406,485608-486092,486185-48...    29   2.4  
12_01_0950 - 9463148-9464358,9465326-9465644                           29   4.2  
10_08_0916 + 21542827-21542938,21543776-21543937,21544387-215445...    28   7.3  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    28   7.3  
05_04_0051 + 17511696-17512526                                         27   9.7  

>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 40/68 (58%), Positives = 58/68 (85%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGVL 619
           M G+FLHVLADT+GSVGV++S +L++  GW+ ADPICS+ I+++I +SV+PL+R+SA +L
Sbjct: 658 MEGIFLHVLADTMGSVGVVISTLLIKYKGWLIADPICSVFISIMIVSSVLPLLRNSAEIL 717

Query: 620 MQRTPTSL 643
           +QR P SL
Sbjct: 718 LQRVPRSL 725


>05_01_0214 - 1615519-1616775
          Length = 418

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVS-AILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGV 616
           +   +LHVL D++ S+GV++  AI+     W   D IC++  ++++  + I ++R+   V
Sbjct: 278 VHSAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIIDLICTLIFSVIVLFTTIKMLRNILEV 337

Query: 617 LMQRTPTSL 643
           LM+ TP  +
Sbjct: 338 LMESTPREI 346


>03_01_0059 +
           484305-484617,484919-485406,485608-486092,486185-486461,
           486495-486626,486721-486893,486982-487204
          Length = 696

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 550 TDRIGSHPSERLHEDGGHYDADGAEGVGQNVKEHPSHDGRTR 425
           T R    PS+   EDG +++ D A    QN +   S D +TR
Sbjct: 143 TSRFSESPSDESDEDGTYFERDRARNTRQNSR---SRDDKTR 181


>12_01_0950 - 9463148-9464358,9465326-9465644
          Length = 509

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 536 ADPICSMAIALLIAASVIPLVRDSAGVLMQRTP 634
           ADP  + A++ + AA+ IP+++ S G   QR P
Sbjct: 22  ADPSATRALSAVAAAATIPILQPSNGRSPQRKP 54


>10_08_0916 +
           21542827-21542938,21543776-21543937,21544387-21544512,
           21544774-21544784
          Length = 136

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 362 RGSDHGRVHDRGGTRICPPGSRGIRAPIQPANAHVLPESKIEI 234
           +G  HG    R  T +CP  ++G   P+QP N  V  E   ++
Sbjct: 59  QGVVHGISSLRAST-LCPNSTQGKNDPVQPKNREVWKEHNAQV 100


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 562  DCH*TDRIGSHPSERLHEDGGHYDADGAEGVG 467
            D H  + +G  PSE L+ED     ADG + VG
Sbjct: 3046 DSHDKNLVGCSPSEDLNEDNSAQLADGDDLVG 3077


>05_04_0051 + 17511696-17512526
          Length = 276

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 547 DRIGSHPSERLHEDGGHYDADGAEGVGQNVKEHPSHD 437
           D IG  PS+ ++  GGH+ A G       +   PS +
Sbjct: 159 DPIGPPPSDEIYNHGGHHTAPGPSNPIDPIGPPPSDE 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,626
Number of Sequences: 37544
Number of extensions: 261714
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)