Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4001
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    97   1e-20
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical ...    60   1e-09
Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical pr...    54   7e-08
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    44   7e-05
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    44   7e-05
AL137227-2|CAB70237.2|  188|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    29   3.7  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 52/127 (40%), Positives = 71/127 (55%)
 Frame = +2

Query: 254 VKHERLLVVSVLGFLVNLVGIYAFXXXXXXXXXXXXXXXXXXXXXXXXXXDDEVHTGAGS 433
           +  +RLL V++ G +VNL G+Y+                               H G G+
Sbjct: 502 INTDRLLFVAISGLIVNLFGMYSLGEHGHSHGGGSSHGHSHGGGGSHGHS----HGGGGN 557

Query: 434 AIMRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAG 613
           A M+GVFLHVLADTLGSV VI+S +L+Q FGW+  DP+CS+ ++LLI  SV PL+  S  
Sbjct: 558 ANMQGVFLHVLADTLGSVFVIISTLLIQWFGWVWVDPLCSLILSLLIIGSVYPLLVSSIS 617

Query: 614 VLMQRTP 634
            L+Q  P
Sbjct: 618 TLLQDVP 624


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 45/66 (68%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGVL 619
           +R   +HV+ D + S+GV+++A++++  GW  ADPIC+   ++++  + + ++RD   VL
Sbjct: 255 VRAALIHVIGDLVQSIGVLIAALIIRFTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVL 314

Query: 620 MQRTPT 637
           M+ TP+
Sbjct: 315 MEATPS 320


>AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2a protein.
          Length = 391

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 45/66 (68%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTFGWMRADPICSMAIALLIAASVIPLVRDSAGVL 619
           +R   +HV+ D + S+GV+++A++++  GW  ADPIC+   ++++  + + ++RD   VL
Sbjct: 236 VRAALIHVIGDLVQSIGVLIAALIIRFTGWTLADPICTFLFSIIVLFTTVTVMRDIFFVL 295

Query: 620 MQRTPT 637
           M+ TP+
Sbjct: 296 MEATPS 301


>Z68119-7|CAA92193.2|  360|Caenorhabditis elegans Hypothetical
           protein T18D3.3 protein.
          Length = 360

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
 Frame = +2

Query: 422 GAGSAI-MRGVFLHVLADTLGSVGVIVSAILMQTF-GWMRADPICSMAIALLIAASVIPL 595
           G G  I +R  F+HVL D L S+GV+V+A+ +     W+  DPIC++  ++++  + I +
Sbjct: 198 GNGDNINVRAAFIHVLGDLLQSLGVLVAALFIYFQPSWVIIDPICTLVFSVIVLCTTIYI 257

Query: 596 VRDSAGVLMQRTPTSL 643
           +RD+  VL++  P+++
Sbjct: 258 LRDAMIVLLEGRPSNI 273


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTF-GWMRA---DPICSMAIALLIAASVIPLVRDS 607
           + GV+LH+L+D  GSV V++SA  +     W  A   DPI S+++A ++  + + LV+ S
Sbjct: 385 IHGVWLHLLSDAFGSVIVMISAGFVYFLPTWKIAAYLDPILSISLASIMGFTAVVLVKTS 444

Query: 608 AGVLMQRTPTSL 643
              L+++TP  L
Sbjct: 445 GEKLLKQTPEGL 456


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
 Frame = +2

Query: 440 MRGVFLHVLADTLGSVGVIVSAILMQTF-GWMRA---DPICSMAIALLIAASVIPLVRDS 607
           + GV+LH+L+D  GSV V++SA  +     W  A   DPI S+++A ++  + + LV+ S
Sbjct: 343 IHGVWLHLLSDAFGSVIVMISAGFVYFLPTWKIAAYLDPILSISLASIMGFTAVVLVKTS 402

Query: 608 AGVLMQRTPTSL 643
              L+++TP  L
Sbjct: 403 GEKLLKQTPEGL 414


>AL137227-2|CAB70237.2|  188|Caenorhabditis elegans Hypothetical
           protein F58D5.2a protein.
          Length = 188

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 446 GVFLHVLADTLGSVGVIVSAILMQTF---GWMRADPICSMAIALLIAA 580
           G  L  L   L SVG++VSAILM  F    W   +P  +   AL  AA
Sbjct: 105 GFILEALLYVLVSVGLLVSAILMWVFCAAHWAEMNPEWATMPALATAA 152


>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 229 YFVILKFNLRLLHYQAVLATIVVKTKAVPQHR--F*PIYFEMVLPIVTYLQPFIF 71
           +F IL F L+  +Y   + +    +K++   R  F  +  + ++P+V  L PF F
Sbjct: 218 FFAILFFGLKCYYYMRKMMSQSGSSKSIGLQRQLFFALVVQTLIPVVLMLSPFTF 272


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 507 MADTMTPTEPRVSART*RNTPLMMAEPAPVCTSSS 403
           ++ T+TP+ P+VS  T   +P   + P  V +SSS
Sbjct: 438 VSTTITPSTPKVSTLTLSQSPTPTSTPLVVSSSSS 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,629
Number of Sequences: 27780
Number of extensions: 220097
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)