Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3997
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 186 7e-48
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 186 1e-47
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.52
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 4.8
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 27 6.3
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 27 6.3
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 6.3
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 6.3
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 6.3
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 27 6.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 6.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 6.3
AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 186 bits (454), Expect = 7e-48
Identities = 91/156 (58%), Positives = 113/156 (72%), Gaps = 2/156 (1%)
Frame = +2
Query: 32 HRXTHTLRPXDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVG 211
H DSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V
Sbjct: 5 HHDDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVA 64
Query: 212 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGD 388
IDIF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +
Sbjct: 65 IDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTE 123
Query: 389 LGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 493
LG Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 124 LGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 186 bits (452), Expect = 1e-47
Identities = 89/156 (57%), Positives = 114/156 (73%), Gaps = 2/156 (1%)
Frame = +2
Query: 32 HRXTHTLRPXDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVG 211
H +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V
Sbjct: 39 HHDEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVA 98
Query: 212 IDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGD 388
IDIF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GD
Sbjct: 99 IDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD 157
Query: 389 LGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 493
LG +R + + +L V+ +CGEE ++ K +T
Sbjct: 158 LGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 263 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 433
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 434 LCTVLKSCGEEC 469
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 218 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 373
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 323 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 439
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 486 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 367
ALT+MT PQ NSL SK + + ++P G+LR
Sbjct: 33 ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 27.5 bits (58), Expect = 6.3
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -3
Query: 385 TIRDFEVLTQVTVVSHQGQVAIIRDISQLVVFALHVGYVHVVCGGTDIFILFTIEDINPN 206
T D LTQV V H GQ+ ++ I++ + L G V G D++ IE++
Sbjct: 137 TTVDAGQLTQVEVEKHGGQL-VVTKINEKSNYDLKPGDVITQVDGKDVYFRADIENLK-G 194
Query: 205 QVNFSVAVLSGFGCGHFN 152
+V +V +G C N
Sbjct: 195 KVELTVEP-AGIHCAPAN 211
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 345 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 485
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 345 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 485
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 63 TPGPQPPSPCNVRPCVKTV 119
TPGP P +PC+ P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 63 TPGPQPPSPCNVRPCVKTV 119
TPGP P +PC+ P V T+
Sbjct: 38 TPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 63 TPGPQPPSPCNVRPCVKTV 119
TPGP P +PC+ P V T+
Sbjct: 192 TPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 63 TPGPQPPSPCNVRPCVKTV 119
TPGP P +PC+ P V T+
Sbjct: 174 TPGPSPMAPCSAGPDVLTL 192
>AF106576-1|AAC78177.2| 664|Caenorhabditis elegans Hypothetical
protein W07E6.1 protein.
Length = 664
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 230 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM---ADNGDLREDLKIPDGDLGTQ 400
KK + H + P + E QL D +DG L +D+ DLR+D D D G
Sbjct: 45 KKVKKSAKKAHEEE-PIEQVEKLQLIDDDEDGLEGLSFPGSDDEDLRDDYSDDDSDAGDH 103
Query: 401 L 403
L
Sbjct: 104 L 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,103
Number of Sequences: 27780
Number of extensions: 294157
Number of successful extensions: 827
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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