Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3996
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    29   0.51 
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   8.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    25   8.3  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 59  LRNSFHSVELRRNCAQLVKNKFNYPIFCKKNY-QNTSYVDL 178
           +R ++H  EL+     LV+N F + +FC   Y QN SY+ +
Sbjct: 81  IRANYHE-ELQTTSYDLVRNPFTHGLFCVVFYHQNKSYLKM 120


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 158 FDNFFYRKSGS*IYFSQVERNF-VSTRPNG 72
           +DNF +    S  YF+++ RNF  S+  NG
Sbjct: 326 YDNFGFMMGASSTYFNKIMRNFNDSSTKNG 355


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 509 YSTN*YCEYIEYSVEAFTLRHSPLCFS 429
           Y    Y   I+Y  +A T  H P+ FS
Sbjct: 162 YGQKEYANAIDYYTQAITCSHDPIFFS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,021
Number of Sequences: 5004
Number of extensions: 42255
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)