Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3996
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    31   0.46 
Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    30   1.4  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    29   3.3  
AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical...    29   3.3  
AL033510-5|CAA22068.1|  239|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical ...    29   3.3  
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U41991-6|AAA83346.2|  344|Caenorhabditis elegans Seven tm recept...    27   10.0 
AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 241 AKRVHLKNKTR--VKKFIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMER 68
           A+ + + N T   +K+F+ T+       +    FFT   + +F+  ++SA SSQ     +
Sbjct: 280 AQNIEITNVTAFLIKRFVNTMEILAGAATPTFFFFTSKEMRKFVSTRVSAASSQGASNLQ 339

Query: 67  ISEPSFTIFFFSLAQF 20
            SEP+ + +      F
Sbjct: 340 FSEPTSSTWIVFTCHF 355



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 IIKTLVTLTYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQL 275
           II   V  T +  ++   FT ++      F P++FF FL+QL
Sbjct: 406 IISLFVLSTVITTLLTTVFTVLIMLLWGYFKPMKFFWFLAQL 447


>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 199 FIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMERISE 59
           F++ L+  + +T  L+  + + R ++  +HKL  I    DR+E + E
Sbjct: 22  FLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLEELRE 68


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 199 FIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQLDRMERISE 59
           F++ L+  + +T  L+  + + R ++  +HKL  I    DR+E + E
Sbjct: 22  FLVLLVLDLEITRDLMTDYVDPRPLQTSYHKLCVIVPYRDRLEELRE 68


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 TYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQLRALRGYFSVTLLSR 317
           T +  +  N F +   FR  + +P++FF+F   L   +GY+ +   +R
Sbjct: 213 TILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALE--KGYWEIPYHNR 258


>Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 TYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQLRALRGYFSVTLLSR 317
           T +  +  N F +   FR  + +P++FF+F   L   +GY+ +   +R
Sbjct: 92  TILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALE--KGYWEIPYHNR 137


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 TYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQLRALRGYFSVTLLSR 317
           T +  +  N F +   FR  + +P++FF+F   L   +GY+ +   +R
Sbjct: 213 TILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALE--KGYWEIPYHNR 258


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 TYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQLRALRGYFSVTLLSR 317
           T +  +  N F +   FR  + +P++FF+F   L   +GY+ +   +R
Sbjct: 213 TILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALE--KGYWEIPYHNR 258


>AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 174 TYVINVMINFFTRVLFFRCTRFAPVRFFSFLSQLRALRGYFSVTLLSR 317
           T +  +  N F +   FR  + +P++FF+F   L   +GY+ +   +R
Sbjct: 92  TILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALE--KGYWEIPYHNR 137


>AL033510-5|CAA22068.1|  239|Caenorhabditis elegans Hypothetical
           protein Y40H7A.9 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 459 KGLYAVLNVFTVLVGTVFNLWIYISK-GERVFWFKRHFLF 575
           KG+Y  ++ FT+++ T+   ++ + K GE+V  F+   ++
Sbjct: 147 KGIYMGISFFTIIISTMITCYVCMWKIGEKVQLFRHSMIY 186


>AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical
           protein H05C05.2a protein.
          Length = 436

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
 Frame = +2

Query: 62  RNSFHSVELRRNCAQLVKNKFN------YPIFCKKNYQNTSYVDLCN*CYDKFFHTSFIF 223
           R   H V+    CA++ KN           +F  K ++ TSY       +D+FF  + + 
Sbjct: 6   RKDNHDVQFVEFCAEIAKNSVKPVTRNKLSVFFNKKHKLTSYPSHFARTFDRFFVETLLQ 65

Query: 224 *VYTFCACTFFFFLISAESLERLF 295
             Y+        FL SA  L+ +F
Sbjct: 66  QPYSLEIKAKTLFLTSAPILDPVF 89


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 208 VKKFIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQ 86
           VK+F+ T+       +    FFT   + + +  ++SA+SSQ
Sbjct: 320 VKRFVNTMEILAGAATPSFFFFTSKEIRKLVSTRVSAVSSQ 360


>U41991-6|AAA83346.2|  344|Caenorhabditis elegans Seven tm receptor
           protein 44 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 502 VLYS-ICGSIYRKVKGYFGLSDIFS 573
           +LYS I G IY    GYFG  DI+S
Sbjct: 136 LLYSLISGFIYGGALGYFGYPDIYS 160


>AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical
           protein F58F6.6 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 208 VKKFIITLIT*VNVTSVLIIFFTENRVVEFIFHKLSAISSQ 86
           VK+F+ T+       +    FFT   + + +  ++SA+SSQ
Sbjct: 277 VKRFVNTMEILAGAATPSFFFFTSKEIRKLVSTRVSAVSSQ 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,057
Number of Sequences: 27780
Number of extensions: 227596
Number of successful extensions: 617
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)