Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3993
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    28   1.7  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   1.7  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   6.7  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   8.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.9  

>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 498 VDVISKPTLVSHAVIAPILRHSVATPFVTHA 590
           VD++SK   +    IAP+L  ++ TP V H+
Sbjct: 36  VDLVSKVNQLYDQQIAPMLSDAIGTPSVNHS 66


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 679 SYDSWTRNVHLHETDETRQLEP 614
           SYD++ RN  LHE D+ RQ EP
Sbjct: 615 SYDTFQRN--LHEPDDERQREP 634


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 345 SQGCCGCQHGIDAIRR--QVLQQERLSGRQVRRQRA 244
           S  CC C++GI +  R  QVL+++  + R  ++Q A
Sbjct: 164 SVSCCDCRYGICSPERFIQVLRRDNEAFRSTQQQDA 199


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 501 QRELDGKQLKEQPEPQIVSSESVRVQELIESG-QENV 394
           Q ELD K L EQP  ++ + ++V     IE+G Q NV
Sbjct: 104 QLELDKKSLYEQPHTKLYNGQNVVAS--IENGYQSNV 138


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 590 SMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*RSNQS 459
           +M++  G  G+S     ++    S+L+NN N S+  ++ R   S
Sbjct: 104 AMNFNEGPTGISSIASKNNSSITSKLQNNSNLSVTSSANRGRTS 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,654
Number of Sequences: 5004
Number of extensions: 44180
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)