Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3993
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0184 - 21006659-21009823                                         31   1.00 
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           30   2.3  
12_01_0993 - 10069179-10070057,10070708-10071049                       29   4.0  
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045...    29   4.0  
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    28   9.3  
05_06_0112 + 25654143-25655060                                         28   9.3  

>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 237 GRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 112
           G +D P P   GV+R+   PP   GDD   P P  DG    P
Sbjct: 272 GDKDQPLPPDCGVKRQL--PPQSDGDDKQQPPPQSDGSDQPP 311


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -3

Query: 477 LKEQPEPQIVSSESVRVQELIESGQENVQ 391
           LK+QP+PQ++++++  V+EL++  +   Q
Sbjct: 89  LKDQPQPQVMANQTQTVEELLQQMRHRYQ 117


>12_01_0993 - 10069179-10070057,10070708-10071049
          Length = 406

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 272 LNRSCCSTCRRIASIPC*HPQQPCDREPRY 361
           L+R CC   R    I C   QQPC    +Y
Sbjct: 336 LDRGCCGVGRNNGQITCLPMQQPCGDRSKY 365


>06_03_1275 +
           28903961-28904123,28904225-28904322,28904406-28904550,
           28904690-28904814,28904957-28905049,28905297-28905362,
           28905459-28905524,28905790-28905870,28905947-28906123,
           28906212-28906287,28906394-28906521,28906639-28906950
          Length = 509

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 QPPHHPALVLDPHGRPLDTAEVINARALHLQAKALE 224
           + PHHPA  +D    P  TA+++    ++  A  LE
Sbjct: 316 EEPHHPAAEVDDEPEPTTTADLLGLNEVNPAAAQLE 351


>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +3

Query: 6   SDLIVRRILTQTTFTMNALVVLFALASVT---CGSLV---PLAQPPHHPALVLDPHG 158
           S+ IV+  L Q       LVV   L++V    C S+V    +A+  HH  LV DP+G
Sbjct: 542 SERIVQDALNQIMVGRTTLVVAHRLSTVRNAHCISVVHKGKIAEQGHHDELVKDPNG 598


>05_06_0112 + 25654143-25655060
          Length = 305

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 28/111 (25%), Positives = 44/111 (39%)
 Frame = -1

Query: 599 SCYSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNASLMGNS*RSNQSHRSFLQKVFVSKS 420
           SC SM      H   + RG H  G + R    ++++  G S  S+ S RS      VS  
Sbjct: 89  SCRSMDPAAAVHPYPRGRGAHGAGRR-RSGGGISSASGGVSGLSSMSCRSMDPSAAVS-- 145

Query: 419 *LSQDRKMCNSRVCKHRCGDSVAHDRRAAVDVNTGLMRYGGRYYSRSD*VD 267
                +     R  +  C  +  H RR A   +   ++  G+++ RS   D
Sbjct: 146 -----QYQYRPREVEFSCSSTPLHRRRRAQRRSQLRLQQHGQWHDRSSAAD 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,164,459
Number of Sequences: 37544
Number of extensions: 342324
Number of successful extensions: 1202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)