Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3993
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.1  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 RQRELDGKQLKEQPEPQIVSSES 436
           R+R  D K+ +   EP+I+SS S
Sbjct: 64  RERSRDRKERERSKEPKIISSLS 86


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 RQRELDGKQLKEQPEPQIVSSES 436
           R+R  D K+ +   EP+I+SS S
Sbjct: 64  RERSRDRKERERSKEPKIISSLS 86


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 RQRELDGKQLKEQPEPQIVSSES 436
           R+R  D K+ +   EP+I+SS S
Sbjct: 64  RERSRDRKERERSKEPKIISSLS 86


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 RQRELDGKQLKEQPEPQIVSSES 436
           R+R  D K+ +   EP+I+SS S
Sbjct: 64  RERSRDRKERERSKEPKIISSLS 86


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 365 HTCAYTLCYCTFSCP 409
           H C +  C C  +CP
Sbjct: 748 HCCDFDACDCEMTCP 762


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 504 RQRELDGKQLKEQPEPQIVSSES 436
           ++R  D ++ +   EP+IVSS S
Sbjct: 64  KERSRDRRERERSKEPKIVSSLS 86


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 147 DPHGRPLDTAEVINARALHLQAKALE 224
           DP+ RP+ + ++ N   + L  K +E
Sbjct: 56  DPNVRPISSHQIANNVTMQLLPKLME 81


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -3

Query: 177 PLYPGDDHGDPAPAQDGEAVAPMAP 103
           P YPG     P+P+      + ++P
Sbjct: 81  PSYPGGGSSSPSPSSPSSFFSSVSP 105


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 442 RKCSCPRVD*VRTGKCAIAECVSTGV 365
           ++CS  R++  R   C + +C++ G+
Sbjct: 59  QQCSILRINRNRCQYCRLKKCIAVGM 84


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 442 RKCSCPRVD*VRTGKCAIAECVSTGV 365
           ++CS  R++  R   C + +C++ G+
Sbjct: 108 QQCSILRINRNRCQYCRLKKCIAVGM 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,416
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)