Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3991
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 117 8e-27
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 109 2e-24
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 91 8e-19
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 2.1
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 3.7
07_03_1316 + 25736931-25737206,25737276-25737329,25738036-257381... 28 6.4
06_01_0595 + 4287106-4287957 28 6.4
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 28 6.4
03_02_0930 - 12480983-12481888 28 6.4
12_02_0279 - 16704284-16704925 28 8.5
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 28 8.5
06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682 28 8.5
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 117 bits (282), Expect = 8e-27
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Frame = +3
Query: 237 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 410
P +I+E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 94 PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPD 149
Query: 411 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 590
K+ F +KEG YR++ F V IV GL+Y ++ G+ VDK M
Sbjct: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEM 209
Query: 591 VGSYPPKTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDK 713
+G++ P+ E +Y TP E PSG+ ARGSYS + F DDD+
Sbjct: 210 LGTFSPQLEPYTYVTPEETTPSGVFARGSYSAKTKFVDDDR 250
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 109 bits (262), Expect = 2e-24
Identities = 61/161 (37%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Frame = +3
Query: 237 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 410
P +I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 79 PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGRPD 134
Query: 411 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHM 590
K F +KEG Y+++ F V IV GL+Y ++ G+ VD M
Sbjct: 135 IFLPLPVEPNA-KGVWFTLKEGSLYKLKFTFSVSNNIVSGLRYTNAVWKTGIKVDSHKEM 193
Query: 591 VGSYPPKTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDK 713
+G++ P+ E +Y TP E PSGM ARGSYS + F DDD+
Sbjct: 194 LGTFSPQPEPYTYVTPEETTPSGMFARGSYSARTKFLDDDR 234
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 91.1 bits (216), Expect = 8e-19
Identities = 54/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = +3
Query: 237 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 416
P+ ++E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 42 PQVPLKEQLELDKDDESLRRWKEQLLGQVDTEQ-LGETAEPE---VKVLNLTILSPDRPD 97
Query: 417 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKMTHMV 593
+K F +K+G Y R FIV IV GLKY ++ GV V+ M+
Sbjct: 98 LVLPIPFVPDEKGYAFALKDGSTYSFRFSFIVSNNIVSGLKYTNTVWKTGVRVENQKVML 157
Query: 594 GSYPPKTEIQSYTTPPEDAPSGMMARGSYS 683
G++ P+ E +Y E P+GM ARGSYS
Sbjct: 158 GTFSPQLEPYTYEGEEETTPAGMFARGSYS 187
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 228 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEP 350
KPPP E + AAD E E+ RK +E A V P
Sbjct: 35 KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP 75
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 243 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 398
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>07_03_1316 +
25736931-25737206,25737276-25737329,25738036-25738189,
25740235-25740313,25740413-25740492,25740588-25740654,
25741548-25741619,25742071-25742223,25742309-25742392,
25742811-25742877
Length = 361
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = +2
Query: 413 RAGSHWGLDRPQKAGIRDKGGCTIPNKDRFYRSARDRARSEVRAEDLQTGRSS*QDDSYG 592
R+ +G DR ++ R + D + R RD R+ RS DD
Sbjct: 276 RSRDRYGRDRYRERDYRRRSRSRSYTPDDYRRRGRDSVSPARRSLSRSRSRSYSPDDYRK 335
Query: 593 RLLSPQN*DSVLHNAPRGCAVRDDG 667
R N +L + RGC+V DDG
Sbjct: 336 RGKHRMNGVELLMS--RGCSVPDDG 358
>06_01_0595 + 4287106-4287957
Length = 283
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 674 SSRHHPGRRILGGRCVRLNLSFGGIGADHMSHLVNWNAQSV 552
SS + PG R L R + GGIGA +HLV+ A+ V
Sbjct: 24 SSPNFPGHRPLHRRVAIVTGGAGGIGAAVTAHLVSLGARVV 64
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = -3
Query: 533 QTVHDLALNDKIDPYSVLYTLLYHEYLLFEVGQVPS 426
++V +++L+ ++D Y VLY + E+L+ + Q+P+
Sbjct: 286 ESVLNVSLSGQVDDYCVLYCERFMEFLIDMLSQLPT 321
>03_02_0930 - 12480983-12481888
Length = 301
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 476 CTIPNKDRFYRSARDRARSEVRAEDL 553
C PN++ +Y ++ DRAR E R + L
Sbjct: 66 CYCPNRESYYLNSADRARQEDRQDML 91
>12_02_0279 - 16704284-16704925
Length = 213
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 408 HRAQPHTMLASSLSLCEDH 352
H+ P + L S+ SLCEDH
Sbjct: 162 HKKSPESCLISAASLCEDH 180
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 368 HFARIIRFNNDSTCLGLSKQCFLVLPKGFILL 273
HFA I+ F NDST L K+ F V +G ++L
Sbjct: 493 HFAEIV-FTNDSTYCSLGKRRFNVFIQGRMVL 523
>06_03_0564 + 22218955-22219060,22219184-22219293,22222363-22223682
Length = 511
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 609 KTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDD 710
KT++++ T PED M+R + N +DD
Sbjct: 223 KTQLETNDTAPEDVEQNAMSRKTQETNGTAPEDD 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,884,340
Number of Sequences: 37544
Number of extensions: 379112
Number of successful extensions: 1071
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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