Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3991
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...   148   3e-36
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...   148   3e-36

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score =  148 bits (359), Expect = 3e-36
 Identities = 79/165 (47%), Positives = 100/165 (60%), Gaps = 1/165 (0%)
 Frame = +3

Query: 225 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 404
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 405 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKM 581
                            + V IKEG  YR+   F VQREI  GL Y  K  R G+ V+  
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENE 132

Query: 582 THMVGSYPPKTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKN 716
            +M+GSY PK EIQ Y +P E+APSGMM RG Y V S  TDDD N
Sbjct: 133 KYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNN 177


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score =  148 bits (359), Expect = 3e-36
 Identities = 79/165 (47%), Positives = 100/165 (60%), Gaps = 1/165 (0%)
 Frame = +3

Query: 225 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 404
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 405 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIVQREIVHGLKYVQKTYRLGVPVDKM 581
                            + V IKEG  YR+   F VQREI  GL Y  K  R G+ V+  
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENE 132

Query: 582 THMVGSYPPKTEIQSYTTPPEDAPSGMMARGSYSVNSLFTDDDKN 716
            +M+GSY PK EIQ Y +P E+APSGMM RG Y V S  TDDD N
Sbjct: 133 KYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNN 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,088
Number of Sequences: 27780
Number of extensions: 321438
Number of successful extensions: 1046
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)