Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3990
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    33   0.031
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    31   0.13 
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.89 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   2.7  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   4.8  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   4.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.3  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   6.3  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   8.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.3  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    25   8.3  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +1

Query: 352 ETTNGAIECDYFINCAGFWARQVGQLARPQVKVPLLPCEHYYLHTKPIDNLDPKTPVIRD 531
           ET     E     NC G WA ++G +  P V     P   + +  K     + +    ++
Sbjct: 173 ETVEETPEASVVFNCTGLWASKLGGVEDPDV----YPTRGHVVLVKAPHVTETRILNGKN 228

Query: 532 PDGYIYLRERDGCILAGGF 588
            D YI  R  +G ++ GGF
Sbjct: 229 SDTYIIPRPLNGGVICGGF 247


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -3

Query: 401  PAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS 234
            P+Q +    S++P  V+T    ++F  T  T   + TPTP + ++   ++ ++CGS
Sbjct: 917  PSQYVCSDGSLSPNTVTTTKATTTFTPTPTT---TTTPTPTTTSATSTNVIAQCGS 969


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 436 PQVKVPLLPCEHYYLHTKPIDNLDPKTPVIRDP 534
           P++ VPLLP E+++LH+  +D +  + P I  P
Sbjct: 220 PRIAVPLLPHEYHHLHSLLLD-VTLRNPQISRP 251



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 601 KPVYEEEIENASQRCLPEDWDHFHVLLQELLQRVPGLTPSP 723
           K  Y+E +   +   LP ++ H H LL ++  R P ++  P
Sbjct: 212 KRAYDELLPRIAVPLLPHEYHHLHSLLLDVTLRNPQISRPP 252


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = -3

Query: 413 LAQKPAQLIK*SHSIAPFVVS--TPDTLSSFDSTAVT---EQSSITPTPLSVASLIRDIQ 249
           L+   A  I  S S +P   S  T    SSF ++ V+   +QSS +   L+ +S      
Sbjct: 49  LSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTS 108

Query: 248 SKCGSPTPSPGIHRPPSTSSTFSIGNNS 165
           S   SPT S   H   S+SS+    ++S
Sbjct: 109 SSSASPTSSSSSHALSSSSSSLVASSSS 136


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
 Frame = -3

Query: 449 TFTCGRANCPTCLAQKPAQLIK*SH--SIAPFVVSTPDTLSS-FDSTAVTEQSSITPT-- 285
           T   G +  P+  +  P+  I  S   S+     S P + SS F S+  T  S I+ +  
Sbjct: 510 TLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSI 569

Query: 284 PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 165
           P + +S+   + S   SP+ +       STSSTFS  + S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = -3

Query: 371 IAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 192
           +A F  +T  TLS  +S    E +S  PTP S + L         SP P+  I  P    
Sbjct: 189 LAVFKETTSSTLSHGNSVEADEINSFNPTPFSSSPL----HFTNSSPNPNSDIVTPDKQL 244

Query: 191 STFSIGNNS*HF-FGVTKSQSMLHDT 117
              S      H  F  T  +   HD+
Sbjct: 245 DVVSEHARYKHLPFTATLRKKSPHDS 270


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 232 GDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIE 375
           GDP ++  S+  E+TD    V ++ + T   +   ++   + TNG IE
Sbjct: 331 GDPPIVLESIAFESTDSLTVVWKESTRTVFETVPWRILSSQATNGLIE 378


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 431 ANCPTCLAQKPAQLIK*SHSIAPFVV-STPDTLSS 330
           A CP C+ ++   + K +  + PF   + PDTL S
Sbjct: 207 AKCPYCMTERFGVIYKPNPKLTPFSFNNNPDTLPS 241


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 481 HTKPIDNLDPKTPVIRDPDGYIYLRERDG 567
           HT  +D++ P   VI    G IY+ +R+G
Sbjct: 507 HTVYVDSITPPVFVIDHSKGVIYVSDRNG 535


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -3

Query: 374  SIAPFVVSTPDTLSSFDSTAVTEQSSIT--PTPLSVASLIRDIQSKCGSPTPSPG-IHRP 204
            S+AP     P   SS    A++  SS++  P P   AS+     +    P P  G  + P
Sbjct: 879  SMAPVRSPFPGA-SSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP 937

Query: 203  PSTSST 186
            P+ S T
Sbjct: 938  PTASGT 943


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 77   LVLANNSEPHC 45
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 73  TRDRMTVYRRMKSQSVSWSIDCDLVTPK 156
           + D  T  ++ K +SVSW  D DLV  K
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDNDLVQVK 520


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 341 CLEWKLQMVQSSVITLSTVRAF 406
           CL W L  +   VIT ST + F
Sbjct: 104 CLRWLLHRIPGGVITWSTYKLF 125


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 380 SHSIAPFVVST-PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 204
           SHS+   ++ T  D    F  + +T+  S      S +S+++       SPT +   H  
Sbjct: 199 SHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSSSSILKPCMPSIASPTSNRLSH-A 257

Query: 203 PSTSSTF 183
           PST + F
Sbjct: 258 PSTPNLF 264


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 RPRWLYISSRKRWMHFSRWIRTNCETCL 611
           RPR  +   R+R  H  RWI  +  TCL
Sbjct: 74  RPRAAFKQQRRR--HVPRWISDSFRTCL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,565
Number of Sequences: 5004
Number of extensions: 70952
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)