Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3990
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 37 0.019
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 36 0.043
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 31 0.70
04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422 31 0.93
03_05_0501 - 24944533-24945507 31 0.93
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 30 2.2
01_02_0074 + 10869546-10871373,10871449-10872077 30 2.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 2.8
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 2.8
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 3.8
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 29 5.0
03_01_0241 - 1866625-1868082,1868892-1869080 28 8.7
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 36.7 bits (81), Expect = 0.019
Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Frame = +1
Query: 37 GWKQCGSLLLARTRDRM-TVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLW 213
GW + GSLL+ RT + M T+ R K+ S + I + ++ H L P L V G ++
Sbjct: 154 GWMRTGSLLVGRTSEEMATLEERTKALSQA-GIRAECLSAASLHALEPELYVGHDGGAMF 212
Query: 214 IPGDGVGDPHLLCMSLMREA----TDKG--VGVMEDCSVTAVLSK-DDKVSGVETTNGAI 372
+P D D +SL+ + + +G + + D +++ V S+ V GV+T+ +
Sbjct: 213 LPEDCQIDA-FQAVSLIEKTNGSYSSEGRYMEIYNDPAMSLVRSETTGTVQGVQTSKHIL 271
Query: 373 -ECDYFINCAGFWARQVGQL---ARPQVKVPLLPCEHYYLHTKPIDNL 504
+ +G W R + + P + +P++P + + L D L
Sbjct: 272 YGRKAIVIASGAWTRTLLRSFLEPNPTLDIPVMPRKGHLLVLDKFDKL 319
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 35.5 bits (78), Expect = 0.043
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +1
Query: 103 MKSQSVSWSIDCDLVTPKKCHEL-FPMLNVEDVL-----GGLWIPGDGVGDPHLLCMSLM 264
+K Q + ID + + L PM+N VL GG+ P GVG + MSL
Sbjct: 248 IKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGG---IAMSLA 304
Query: 265 REATDKGVGVMEDCSVTAVLSKDDKVSGVETTNG 366
DKG + +VT V+ ++ K GV +NG
Sbjct: 305 DGLVDKGSEIRYKANVTNVILENGKAVGVRLSNG 338
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 253 YRANAGLLHHHL----ESTGLQAHLQHSALEIIHDISLV*LSH 137
YR G LH H+ E+TG Q + HS LE +H I++ ++H
Sbjct: 394 YRICDGQLHIHILDNHETTGPQRWIHHSELEEVHTITVERINH 436
>04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422
Length = 121
Score = 31.1 bits (67), Expect = 0.93
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 162 TFLWCN*VTIYAPRYRLTFHSSVNSHAVSCSCQ 64
+ +W T+ A R+R F S++ H C+CQ
Sbjct: 25 SIMWVKDPTMIAVRWRRAFRSAIQKHMALCNCQ 57
>03_05_0501 - 24944533-24945507
Length = 324
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 529 DPDGYIYLRERDGCILAGGFEPIAKPVYEEEIENASQRCLP 651
D DG+ L E +GC +AGG + V E+ +E RC P
Sbjct: 132 DNDGFFLLDEEEGCGVAGG---VGFGVDEDPLEGFETRCPP 169
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -3
Query: 320 TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 174
T +T + +T +P++V++L+ + G+H+ + SST S+G
Sbjct: 109 TYITVGAEVTESPVNVSALVVPAMRNVHTALKKAGLHKKITISSTHSLG 157
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 235 DPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDK---VSGVETTNGAIECDYFINCAGF 405
D LL ++ R+ G ++ DC V+ +D K +GVE T A++ ++C F
Sbjct: 305 DARLLTETVRRDWQLHGY-IVSDCDSVRVMVRDAKWLGYTGVEATAAAMKAGLDLDCGMF 363
Query: 406 W 408
W
Sbjct: 364 W 364
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 232 GDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIECDYF 387
G H+ CM +M E +G + E+C K K+ + GA + +F
Sbjct: 250 GAEHIYCMRVMMEEVPEGEWLCEECENELEYEKKKKLEKSQLKVGASKSQFF 301
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 338 LSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 180
LSS DS T++ P+P++ + I++ SP PSP P S++ S
Sbjct: 53 LSSSDSD--TDEPPARPSPIAQLKTLASIRAPAPSPKPSPSPSPSPRRSTSAS 103
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 238 GLLHHHLESTGLQAHLQHSALEIIHDI 158
GL+ HHLE G HL++ +L H+I
Sbjct: 810 GLVDHHLEHIGKLVHLRYLSLRECHNI 836
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = -1
Query: 349 LQTLCRLSIAQLSRNNLPSHPHLYQLLLS*ETYRANAGLLHHHLESTGLQAHLQHSALEI 170
L L L A S ++LPSH HL LS + +A H S+ L L + L +
Sbjct: 104 LSHLLSLRSASASLSSLPSHLHLLSSHLSLLSSHLSAPRAHLAHSSSSLSTLLSTADL-L 162
Query: 169 IHDISLV*LSHNLCST 122
+H LV LS L ++
Sbjct: 163 LHSHRLVRLSSRLLTS 178
>03_01_0241 - 1866625-1868082,1868892-1869080
Length = 548
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 523 IRDPDGYIYLRERDGCILAGGFEPIAKPVYEEEI 624
+R PDGYI L++R I+ G E I+ E I
Sbjct: 422 VRHPDGYIQLKDRAKDIIISGGENISSIEVESVI 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,721,815
Number of Sequences: 37544
Number of extensions: 481042
Number of successful extensions: 1587
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1587
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -