Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3990
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 99 3e-21
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 68 8e-12
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 68 8e-12
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 36 0.029
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 33 0.27
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.84
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 31 0.84
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 31 1.1
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 31 1.1
AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical ... 30 1.5
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 29 2.6
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.6
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 2.6
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.6
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 29 3.4
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 4.5
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 4.5
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 4.5
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 4.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 5.9
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL132852-3|CAN86966.1| 249|Caenorhabditis elegans Hypothetical ... 28 5.9
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 7.8
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 99.1 bits (236), Expect = 3e-21
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Frame = +1
Query: 46 QCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVT-PKKCHELFPMLNVEDVLGGLWIPG 222
+CG LA + + RRM S+ V + +L+ + E +P L EDV L+ P
Sbjct: 103 KCGRTYLASSMANEILLRRMYSRGVVHNDKVELLDCQSEMLERWPFLQTEDVQLALFSPE 162
Query: 223 DGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDK-VSGVETTNGAIECDYFINCA 399
D DP LC L A D G + E V V D+K V GV T G IE +F++ A
Sbjct: 163 DVALDPVALCQHLALIAKDYGALIYESNPVLEVHIGDEKQVYGVSTKMGFIETSHFVDAA 222
Query: 400 GFWA--RQVGQLARPQVKVPLLPCEHYYLHTK--PIDNLDPKTPVIRDPDGYIYLRERDG 567
G WA V L V+ PC + Y+HT P ++ TP+ D DG + LR
Sbjct: 223 GIWAGSHLVKALPHQHVQTAAYPCTYSYIHTSKLPTGSVSDMTPIFNDLDGNVMLRTTSF 282
Query: 568 CILAGGF-EPIAKPVYEEEIENASQRCLPE-DWDHFHVLLQELLQRVPGL 711
L GF E +P+ + +A+ PE DW+ F L++L+ R P L
Sbjct: 283 KTLCAGFAEESIRPL-ARQTGSATPWQHPEPDWNTFDPNLEKLISRCPML 331
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 67.7 bits (158), Expect = 8e-12
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 13/253 (5%)
Frame = +1
Query: 1 LLKELEAR-GRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSID-CD--LVTPKKCHE 168
L +LEA G ++ G++ LA R+ +R+ ++ D C L+TP + E
Sbjct: 96 LYSKLEAETGVNIDFQPTGTIRLATNETRLAEFRKYVNRDYYKEGDVCKTTLLTPDQVRE 155
Query: 169 LFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSG 348
L P ++ +LG L DG L +L+ A + G V++ + K DK G
Sbjct: 156 LAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGGAQVIDGAIPKEI--KYDKEKG 213
Query: 349 ---VETTNGA-IECDYFINCAGFWARQVGQLARPQVKVPLLPCEHYYLHTKPIDNLDPKT 516
+ +G + IN G WA + +L+ + P++ EH Y P P T
Sbjct: 214 HWIIALEDGTLVTTRNLINAGGIWANDIARLSGHAL--PVVVVEHQYAVLTPNKTPGP-T 270
Query: 517 PVIRDPDGYIYLRERDGCILAGGFEPIAKPV-----YEEEIENASQRCLPEDWDHFHVLL 681
P I D D Y+R+ L GGFE + K V Y++ + + + D+
Sbjct: 271 PAIIDHDSTFYVRKSGDDYLFGGFESLEKTVIREDWYKKGVPTEGSKSIQADFSRLDDAY 330
Query: 682 QELLQRVPGLTPS 720
+ +PGL S
Sbjct: 331 KRACDLIPGLQGS 343
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 67.7 bits (158), Expect = 8e-12
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 13/253 (5%)
Frame = +1
Query: 1 LLKELEAR-GRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSID-CD--LVTPKKCHE 168
L +LEA G ++ G++ LA R+ +R+ ++ D C L+TP + E
Sbjct: 103 LYSKLEAETGVNIDFQPTGTIRLATNETRLAEFRKYVNRDYYKEGDVCKTTLLTPDQVRE 162
Query: 169 LFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSG 348
L P ++ +LG L DG L +L+ A + G V++ + K DK G
Sbjct: 163 LAPDVDHSKILGALHTTNDGTISARALTQALVVGAKNGGAQVIDGAIPKEI--KYDKEKG 220
Query: 349 ---VETTNGA-IECDYFINCAGFWARQVGQLARPQVKVPLLPCEHYYLHTKPIDNLDPKT 516
+ +G + IN G WA + +L+ + P++ EH Y P P T
Sbjct: 221 HWIIALEDGTLVTTRNLINAGGIWANDIARLSGHAL--PVVVVEHQYAVLTPNKTPGP-T 277
Query: 517 PVIRDPDGYIYLRERDGCILAGGFEPIAKPV-----YEEEIENASQRCLPEDWDHFHVLL 681
P I D D Y+R+ L GGFE + K V Y++ + + + D+
Sbjct: 278 PAIIDHDSTFYVRKSGDDYLFGGFESLEKTVIREDWYKKGVPTEGSKSIQADFSRLDDAY 337
Query: 682 QELLQRVPGLTPS 720
+ +PGL S
Sbjct: 338 KRACDLIPGLQGS 350
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 35.9 bits (79), Expect = 0.029
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = -3
Query: 422 PTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSK 243
PT + P+ ++ + VV+ P T+ + STAVT+ S++ P +V ++ + +K
Sbjct: 293 PTTVVTIPSTVVTSPITTPSTVVTVPSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTK 352
Query: 242 CGS-PTPSPGIHRPPSTSST 186
+ T SP + P+T T
Sbjct: 353 PNTVVTSSPTVATTPTTVVT 372
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 32.7 bits (71), Expect = 0.27
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = -3
Query: 461 GSKGTFTCGRANCPTCLAQKPAQLIK*SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPT- 285
G +G F C R C + L Q + + SI +S P T+ S + T S+ITPT
Sbjct: 126 GQRGRFFC-RNKCDSGLEQDGSATSTSTTSITTSTLSPPSTVQSTTTAKPTTTSTITPTT 184
Query: 284 ---PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 165
P S + S S P ST ++ ++ +S
Sbjct: 185 SADPTSTITTSTTPNPSSPSTVQSTTTAEPTSTITSTTVPESS 227
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 236 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 147
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 52 APMPSQKILPPPTTSAPSNSGNNSINYMGV 81
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 236 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 147
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 113 APMPSQKILPPPTTSAPSNSGNNSINYMGV 142
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 236 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 147
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 77 APMPSQKILPPPTTSAPSNSGNNSINYMGV 106
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.84
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 1/155 (0%)
Frame = +1
Query: 4 LKELEARGRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPML 183
++ELE + W + G L A ++ +K + ID +++ K E +P
Sbjct: 73 IEELEKKRGEKLWNKLGLLWAATGNQVDSISGHLKKHN----IDHEVLPGTKITERYPQF 128
Query: 184 NVEDVLGGLWIPGDGVGDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTN 363
+D L P GV + + E G + ++ V + D+ + V+T+
Sbjct: 129 KFDDKWTALIDPMGGVIYANKWLKAFQEEFITLGGTIQDNEPVISYGETDNVIVNVKTST 188
Query: 364 GAIECDYFINCAGFWARQVGQLARPQVK-VPLLPC 465
G + + I G W + Q+K + L C
Sbjct: 189 GEYKTNKIIFTVGCWITKFFPNVNFQIKPISLAVC 223
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 365 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 192
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 191 STFS 180
S+FS
Sbjct: 610 SSFS 613
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 365 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 192
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 191 STFS 180
S+FS
Sbjct: 610 SSFS 613
>AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical
protein Y64G10A.11 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 231 RRPAFALYVSYERSN**RCGCDGRLFRDSCAIERRQSVWSGNYKWCNR 374
+ P Y Y RS + GC+G+ SCA+ + ++++ YK NR
Sbjct: 19 KEPCVQAYTKYVRSR--KPGCNGKF--QSCAVRQPKTIYFHTYKKVNR 62
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 350 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGN 171
TP + DS + S+ P+ ++ I K TPSP + + PS+SS+ S +
Sbjct: 333 TPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRK---RTPSPVVRKAPSSSSSNSTSS 389
Query: 170 NS 165
+S
Sbjct: 390 SS 391
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 341 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 174
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 173 NNS*HF-FGVTKSQSMLHDT 117
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -3
Query: 341 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 174
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 173 NNS*HF-FGVTKSQSMLHDT 117
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -3
Query: 359 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 189
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 338
Query: 188 TF---SIGNNS*HFFGVTKSQSMLHDT 117
T ++ N S G+ ++L++T
Sbjct: 339 TVLAPTLKNLSDSGVGINNVSTVLNET 365
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -3
Query: 359 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 189
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 320
Query: 188 TF---SIGNNS*HFFGVTKSQSMLHDT 117
T ++ N S G+ ++L++T
Sbjct: 321 TVLAPTLKNLSDSGVGINNVSTVLNET 347
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 359 VVSTPDTLSSFDSTAVTEQSSIT-PTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 183
V P + + A EQ+ + P P VA+ D++ CGS P+P P +T S +
Sbjct: 230 VTPAPAAAAPAPADAPVEQAPVAVPAPAPVAA--PDVE--CGSAAPAPAAAAPAATDSGY 285
Query: 182 SIGNNS 165
NS
Sbjct: 286 RSKRNS 291
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 29.1 bits (62), Expect = 3.4
Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 39/258 (15%)
Frame = +1
Query: 52 GSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDV-LGGLWIPGDG 228
G L LA+T + + + R + L++ + + +P +NV+DV L L + +G
Sbjct: 187 GYLRLAKTDEEVEMMRSAWKVQIERGAKVQLLSKDELTKRYPYMNVDDVLLASLGVENEG 246
Query: 229 VGDPHLLCMSLMREATDKGV----GVME------------------DCSVTAVLSKDDKV 342
D L ++ + GV G +E D + + ++
Sbjct: 247 TIDTWQLLSAIREKNITLGVQYVKGEVEGFQFERHRASSEVHAFGDDATADENKLRAQRI 306
Query: 343 SGV-------ETTNGAIECDYFINCAGFWARQVGQLA-------RPQVKVPLLPCEH-YY 477
SGV + + I +N AG WA QV ++A V VP+ P + +
Sbjct: 307 SGVLVRPQMNDASARPIRAHLIVNAAGPWAGQVAKMAGIGKGTGLLAVPVPIQPRKRDVF 366
Query: 478 LHTKPIDNLDPKTPVIRDPDGYIYLRERDGCILAGGFEPIAKPVYEEEIENASQRCLPED 657
+ P ++ P I DP ++ R+ D +G + + +EE L D
Sbjct: 367 VIFAP--DVPSDLPFIIDPSTGVFCRQTD----SGQTFLVGRTPSKEEDAKRDHSNLDVD 420
Query: 658 WDHFH-VLLQELLQRVPG 708
+D F+ + L+ RVPG
Sbjct: 421 YDDFYQKIWPVLVDRVPG 438
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 350 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 183
TP T S+ + ++ E+ PT + AS + + PTPS I +PP T++ F
Sbjct: 16 TPTTSSNIELHSINEE----PTTVHPASS-ENSEDVPADPTPSSSISQPPPTTTLF 66
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -3
Query: 380 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 201
S ++ P V +P +S + A ++ + T + + S + D S GS P P P
Sbjct: 22 SSTVIPSTVPSPTGDTSQVTGASSDSTGSTGSSAAPGSTVTD-GSNTGSTAPVPSTTPTP 80
Query: 200 STSSTFSIGNN 168
STF + N+
Sbjct: 81 MKFSTFPVSND 91
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 97 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 201
++MKS + S SID L +P C P+ N EDV+
Sbjct: 127 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 159
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 97 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 201
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 97 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 201
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 97 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 201
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -3
Query: 380 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 201
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 200 STSSTFSIGNNS*HFFGVTKSQSMLHDT 117
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -3
Query: 380 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 201
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 200 STSSTFSIGNNS*HFFGVTKSQSMLHDT 117
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -3
Query: 323 STAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS*HF 156
STAVT SS+ +P P S+++ I S S +PS P S+ +I ++S F
Sbjct: 20 STAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTF 79
Query: 155 -FGVTKSQSMLHDT 117
V S S + T
Sbjct: 80 PSSVASSPSTVGST 93
>AL132852-3|CAN86966.1| 249|Caenorhabditis elegans Hypothetical
protein Y95D11A.3 protein.
Length = 249
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 542 IYIFEKEMDAF*QVDSNQLRN 604
+Y+F++E D Q+D NQL+N
Sbjct: 68 VYLFDEETDQIHQLDPNQLKN 88
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -3
Query: 359 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 192
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -3
Query: 359 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 192
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,642
Number of Sequences: 27780
Number of extensions: 413861
Number of successful extensions: 1459
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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