Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3990
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.96 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 229 HHHLESTGLQAH 194
           HHHL+ST +Q H
Sbjct: 148 HHHLQSTAVQDH 159


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 702 HPLQQLLQQHV 670
           H +QQLLQQH+
Sbjct: 72  HQMQQLLQQHI 82



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 251 QSKCGSPTPSPGIHRPPSTSSTFSIGNNS 165
           Q   G+P P P  H+ P      S  N S
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPS 43


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 619 EIENASQRCLPEDWDHFHVLLQELLQRVPGL 711
           ++ NA Q  L ++      +L+ELL+++P L
Sbjct: 365 KLRNALQTVLAQNHPQHPDILRELLKKIPDL 395


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 278 SVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 180
           S A +   +     SP+P+P I   PS+S++ S
Sbjct: 496 STAVIHEPVVETNSSPSPNPRIASAPSSSTSSS 528


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 662 SQSSGKQRCDAFSISSS*TGFAIGSNPPAKMHPS 561
           S + G+  C +  +  S  GF   S  P + HPS
Sbjct: 291 SSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPS 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,045
Number of Sequences: 438
Number of extensions: 4901
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)