Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3989
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    29   2.5  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    29   2.5  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    29   2.5  
Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81541-2|CAB04412.2|  152|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical ...    28   7.7  

>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
           D    LPP F   + P      +N L N  ++ +  + Y+KNR   T   PG+
Sbjct: 708 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 760


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
           D    LPP F   + P      +N L N  ++ +  + Y+KNR   T   PG+
Sbjct: 688 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 740


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 337 DSQEVLPPYFKPPIKPHYKPGYLNLLLNY*KFSVSSWRYKKNRTN*TNMTPGH 495
           D    LPP F   + P      +N L N  ++ +  + Y+KNR   T   PG+
Sbjct: 688 DEGSSLPPPFNIIVTPKSLIYVMNCLFNTVRWLLGKYTYQKNRNRATIRRPGY 740


>Z81593-4|CAB04742.1|  334|Caenorhabditis elegans Hypothetical
           protein T20B3.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 82  IIHAISSSCIP--CLFFCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
           ++H IS   IP  C    C F   P S   VKW +  +H+++ +
Sbjct: 21  VLHVISYISIPVHCYGGFCVFAKTPISMQSVKWSMMNLHLFSCL 64


>Z81593-5|CAB04743.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.5 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 82  IIHAISSSCIPCL---FFCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
           ++HAIS   +P     F+C      P+ Q  VKW +  +H+++ I
Sbjct: 21  VLHAISVISVPVYVYGFYCVLLKTPPTMQ-SVKWSMMNVHVFSCI 64


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 82  IIHAISSSCIPCLFF--CCCFDG*PSSQPGVKWLLEPIHIYNVI 207
           ++H IS   IP   F   C F   P S   VKW +  +H+++ +
Sbjct: 21  VLHVISFISIPIHVFGVFCVFFKTPISMQSVKWSMMNVHLFSCL 64


>Z81541-2|CAB04412.2|  152|Caenorhabditis elegans Hypothetical
           protein F48F5.2 protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 477 QHDSRSPSTPNPSLATKGSTSKLTHRHGPLSFSP--DLLRGPR 599
           Q  +R PS+   S   +GS+S   H HG  S  P  DLLR  R
Sbjct: 84  QLHARRPSSLKVSGPVQGSSSSHPHNHGSPSSEPNTDLLRNVR 126


>AL110477-1|CAB54325.1|  331|Caenorhabditis elegans Hypothetical
           protein Y113G7B.2 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 82  IIHAISSSCIPCLF--FCCCFDG*PSSQPGVKWLLEPIHIYNVI 207
           ++H IS   IP     F C     PS+   VKW +  +H+++ +
Sbjct: 21  VLHTISIISIPIYIYGFFCILCKTPSTMNSVKWSMINVHVFSCL 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,754
Number of Sequences: 27780
Number of extensions: 315155
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)