Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3989
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.95 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.8  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   5.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   6.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   6.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 678 YLFYWNEVPYGMMRRAVLRR 619
           +L +W   P+G MRR VL +
Sbjct: 172 FLIHWIWTPHGWMRRNVLNK 191


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 163 RAVSSVNHQSNNKKKDMGYMSSKS 92
           R  S  ++Q+NN+  D  + SSKS
Sbjct: 433 RHSSKSDNQNNNQHNDQAHHSSKS 456


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 301 AEIGRVVVPTRADSQEVLPPYFKPPIKPHYKPGYLNLLLNY 423
           A++G+V V     +Q V+   ++ PI+P      +  L +Y
Sbjct: 80  AKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDY 120


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = +3

Query: 324 PYPRRLTRGPTTLFQTAYKASLQTWLSEFASELLKIFSIVLEI 452
           P+PRR T      F T     +  W+   +  +  +  I+  I
Sbjct: 419 PFPRRATLAQLHNFTTMTPQEIAQWIDRRSRIVFPVAFIIFNI 461


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 364 FKPPIKPHYKPGY 402
           F+PP+ P + P Y
Sbjct: 383 FRPPLNPRFGPTY 395


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 364 FKPPIKPHYKPGY 402
           F+PP+ P + P Y
Sbjct: 394 FRPPLNPRFGPTY 406


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 364 FKPPIKPHYKPGY 402
           F+PP+ P + P Y
Sbjct: 394 FRPPLNPRFGPTY 406


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 364 FKPPIKPHYKPGY 402
           F+PP+ P + P Y
Sbjct: 383 FRPPLNPRFGPTY 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,577
Number of Sequences: 438
Number of extensions: 4087
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)