Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3988
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                27   0.092
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.65 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 0.092
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 283 LGKGGFSEVHKAFDLKEQRYTACKVHQLNK---DWKEDKKANYIKHA 414
           LG GGF  V+KA    EQ   A K+ Q  K       +K A+++KH+
Sbjct: 73  LGSGGFGIVYKALYKGEQ--VAAKIIQTEKYSNMLNSEKHASFLKHS 117


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 2   PNPRRYTTALTHPPSSSQTHYPA*LTKSTMRLMK 103
           PN    T+  +  P+    H P  LTKS M +M+
Sbjct: 363 PNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVME 396


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 97  DEILKLRQSALKKEDADLQLEMEKLERERNLHI 195
           D   +L ++A+   D    LE+ ++ R+R LH+
Sbjct: 87  DRSRELIKAAILANDFMKNLELTQIRRDRGLHV 119


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 110 LRISSAS*YSW*VMLGSGSG 51
           L +SSA  ++W V+L SG G
Sbjct: 608 LNLSSAVWFAWGVLLNSGIG 627


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 84  LLVSHAG*WVWLEEG 40
           ++VSH G  VWL  G
Sbjct: 111 VIVSHTGEVVWLSHG 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 296 DSVKYTRRSI*RSNDTPRVKCISSTKTG 379
           D V +   S   +ND    KCI+++K G
Sbjct: 451 DVVSHLNISSTHTNDGGLYKCIAASKVG 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,575
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)