Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3987
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    29   0.75 
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    28   1.3  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    28   1.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   1.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.3  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   7.0  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   9.2  

>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 85  LVNHFDIHCLLGS--WN--SGWHLHYCTSVHSVHRGVIWFSRFPII 210
           LV+  DI+C+ GS  W   S  H H    VHSV    I  SR PII
Sbjct: 258 LVHPEDIYCISGSSDWVCVSTQHFHCNIHVHSVSGNAIRKSRNPII 303


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 758 CFLLSIKKNSVNIIPTYFYGLEYV*RILSALSRYFTIFAVTR 633
           C+LL+I   S  +    F G ++V  IL++LS+ F +  VTR
Sbjct: 191 CYLLNISSQSQVLDLLAFSGYKFVGLILTSLSKLFEMPWVTR 232


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 693 IRLKNIKCII*VLYNFRGHAGDRP 622
           I  KN+ C++ ++ N  GHAG +P
Sbjct: 118 IHEKNMLCMVDIVVNHMGHAGSKP 141


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 704 YGLEYV*RILSALSRYFTIFAVTRG 630
           YG +   R+LS LSR FT +A  RG
Sbjct: 816 YGPDIAGRLLSVLSRLFTAYAQMRG 840


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 200 FLLSVVQFPKYCAQAMMEGRGFN*FRHNF 286
           FLL+ +Q+ + C ++  E R +  F HNF
Sbjct: 396 FLLADIQWQRVCYKSFRESRTWLHFLHNF 424


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 684 KNIKCII*VLYNFRGHAGDRP 622
           +N+ C+I ++ N   HAGD P
Sbjct: 126 RNMLCMIDIVVNHMAHAGDSP 146


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 620 NSNFNYICDSIVHIYKSH 567
           NS  +Y+CD++  +YKS+
Sbjct: 369 NSIIDYVCDALAALYKSN 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,030
Number of Sequences: 5004
Number of extensions: 71950
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)