Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3986
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 349 3e-97
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 348 3e-97
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 348 3e-97
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 180 1e-46
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 151 6e-38
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 97 2e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 4e-07
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 44 2e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 36 0.006
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.019
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.24
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.32
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.42
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 0.97
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.3
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.7
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 6.8
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 9.0
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 9.0
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 9.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 349 bits (857), Expect = 3e-97
Identities = 161/205 (78%), Positives = 181/205 (88%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI
Sbjct: 111 CAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
Query: 371 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIE 550
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 551 ALDAILPPARPTDKPLRLPLQDVYK 625
A+D+I PPARPTDKPLRLPLQDVYK
Sbjct: 229 AIDSIEPPARPTDKPLRLPLQDVYK 253
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 348 bits (856), Expect = 3e-97
Identities = 160/205 (78%), Positives = 181/205 (88%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI
Sbjct: 111 CAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
Query: 371 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIE 550
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 551 ALDAILPPARPTDKPLRLPLQDVYK 625
A+D+I PPARPTDKPLRLPLQDVYK
Sbjct: 229 AIDSIEPPARPTDKPLRLPLQDVYK 253
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 348 bits (856), Expect = 3e-97
Identities = 160/205 (78%), Positives = 181/205 (88%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI
Sbjct: 111 CAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEI 168
Query: 371 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIE 550
KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+E
Sbjct: 169 VKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLE 228
Query: 551 ALDAILPPARPTDKPLRLPLQDVYK 625
A+D+I PPARPTDKPLRLPLQDVYK
Sbjct: 229 AIDSIEPPARPTDKPLRLPLQDVYK 253
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 180 bits (439), Expect = 1e-46
Identities = 97/209 (46%), Positives = 128/209 (61%), Gaps = 3/209 (1%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSF YAW+LD + ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD
Sbjct: 221 KGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSAD 280
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
AVL+V + FE G +NGQTREHA L LG+ +++V VNK+D +SE RF+EI
Sbjct: 281 FAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEI 338
Query: 371 KKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGKADGKC 541
K VS + IK +G+ + V FVPIS G N++ + S W+K G
Sbjct: 339 KNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPT 386
Query: 542 LIEALDAILPPARPTDKPLRLPLQDVYKN 628
L+ ALD ++PP +P KPLRL + DVY++
Sbjct: 387 LLSALDQLVPPEKPYRKPLRLSIDDVYRS 415
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 151 bits (367), Expect = 6e-38
Identities = 78/210 (37%), Positives = 124/210 (59%), Gaps = 4/210 (1%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
K S+ +W LD ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD
Sbjct: 282 KESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQAD 341
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
VL+++A GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E
Sbjct: 342 IGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKEC 401
Query: 371 KKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWQVERKEGKADGK 538
++S +++++ GYN V ++P+S + G N+ + S+ PW++ G
Sbjct: 402 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------GP 449
Query: 539 CLIEALDAILPPARPTDKPLRLPLQDVYKN 628
L+E LD++ R + P +P+ YK+
Sbjct: 450 SLLEYLDSMTHLERKVNAPFIMPIASKYKD 479
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 96.7 bits (230), Expect = 2e-21
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 2/197 (1%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+DK E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A
Sbjct: 91 IDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSAT 150
Query: 218 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 397
G+ QTREH LLA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 151 DGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY-- 201
Query: 398 KIGYNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA-ILP 571
G+ GDN + + + +G + E G L+EA+D+ I
Sbjct: 202 ---------------GFDGDNTPIVSGSALCALEGREPE--IGLNSITKLMEAVDSYITL 244
Query: 572 PARPTDKPLRLPLQDVY 622
P R TD P + ++DV+
Sbjct: 245 PERKTDVPFLMAIEDVF 261
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 49.6 bits (113), Expect = 4e-07
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +2
Query: 35 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 214
V+D L AER+RGITI+ A F + +ID PGH DF + + D AV I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-- 124
Query: 215 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 328
+ AG+ QT+ A G+ ++I VNKMD
Sbjct: 125 ---DGSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +2
Query: 38 LDKLKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 205
LDKL+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 206 VAAGTG 223
V A G
Sbjct: 155 VDASQG 160
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 482 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKN 628
+P K V K GK + L E + I PP + PLR L D + N
Sbjct: 206 IPMSKPILVSSKTGKNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYN 254
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 116 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 295
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 296 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 394
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.5 bits (78), Expect = 0.006
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 19/106 (17%)
Frame = +2
Query: 8 VKGSFKYAWVLDKLKAERERGITIDIAL----WK---------------FETSKYYVTII 130
V+G +D ++ ERE+GITI A W+ FE S Y + II
Sbjct: 92 VRGKDNVGAKMDFMELEREKGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINII 150
Query: 131 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 268
D PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 151 DTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.019
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 68 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 223
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.24
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 113 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 223
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 41 DKLKAER-ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 163
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 125 IIDAPGHRDFIKNMITGTSQADCAVLIV 208
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 582 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 445
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 113 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 208
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 113 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 208
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 56 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 208
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 345 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 515
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 516 RKA 524
++
Sbjct: 205 SQS 207
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 323 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 493
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 411 TQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLT 590
T L L+ F T+T W++ PK L R R + A L N L + H P +
Sbjct: 360 TPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHSCHPQS 419
Query: 591 SP 596
SP
Sbjct: 420 SP 421
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 374 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 499
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 441 LDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLK 551
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,625
Number of Sequences: 5004
Number of extensions: 60313
Number of successful extensions: 216
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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