Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3986
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 377 e-105
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 377 e-105
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 183 7e-83
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 202 2e-52
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 196 1e-50
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 196 1e-50
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 155 3e-38
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 88 4e-18
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 88 4e-18
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 85 5e-17
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 85 5e-17
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 85 5e-17
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 40 0.001
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.008
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 35 0.042
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 33 0.13
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.13
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.22
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.22
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.29
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 30 1.2
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.1
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.1
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.1
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.1
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 29 2.7
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 29 2.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 3.6
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.3
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 377 bits (928), Expect = e-105
Identities = 175/205 (85%), Positives = 187/205 (91%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 371 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIE 550
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+E
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Query: 551 ALDAILPPARPTDKPLRLPLQDVYK 625
ALD+I+PP RPTD+PLRLPLQDVYK
Sbjct: 231 ALDSIIPPQRPTDRPLRLPLQDVYK 255
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 377 bits (928), Expect = e-105
Identities = 175/205 (85%), Positives = 187/205 (91%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEI 170
Query: 371 KKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIE 550
EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+E
Sbjct: 171 TNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLE 230
Query: 551 ALDAILPPARPTDKPLRLPLQDVYK 625
ALD+I+PP RPTD+PLRLPLQDVYK
Sbjct: 231 ALDSIIPPQRPTDRPLRLPLQDVYK 255
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 183 bits (445), Expect(2) = 7e-83
Identities = 82/108 (75%), Positives = 92/108 (85%)
Frame = +2
Query: 302 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 481
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 482 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYK 625
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYK
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYK 221
Score = 142 bits (344), Expect(2) = 7e-83
Identities = 64/67 (95%), Positives = 67/67 (100%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVA 211
CAVL+VA
Sbjct: 111 CAVLVVA 117
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 202 bits (493), Expect = 2e-52
Identities = 99/122 (81%), Positives = 106/122 (86%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
KGSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQAD
Sbjct: 51 KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQAD 110
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
CAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I
Sbjct: 111 CAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTI 167
Query: 371 KK 376
++
Sbjct: 168 QR 169
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/87 (40%), Positives = 42/87 (48%)
Frame = +3
Query: 366 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 545
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 546 LKLSMPSCHLPAPLTSPCVFPCKTYTK 626
+L PS H A LT VF + T+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTR 238
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 196 bits (478), Expect = 1e-50
Identities = 99/206 (48%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
K SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD
Sbjct: 214 KASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQAD 273
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EI
Sbjct: 274 AAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 331
Query: 371 KKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 547
K +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+
Sbjct: 332 KNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLL 376
Query: 548 EALDAILPPARPTDKPLRLPLQDVYK 625
E +D+ + P P+D PLR+ + DV K
Sbjct: 377 ELIDSFVAPQPPSDGPLRIGISDVLK 402
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 196 bits (478), Expect = 1e-50
Identities = 99/206 (48%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 190
K SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD
Sbjct: 232 KASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQAD 291
Query: 191 CAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEI 370
A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EI
Sbjct: 292 AAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEI 349
Query: 371 KKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLI 547
K +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ DG CL+
Sbjct: 350 KNNLSVFLTRQAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLL 394
Query: 548 EALDAILPPARPTDKPLRLPLQDVYK 625
E +D+ + P P+D PLR+ + DV K
Sbjct: 395 ELIDSFVAPQPPSDGPLRIGISDVLK 420
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 155 bits (375), Expect = 3e-38
Identities = 80/204 (39%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Frame = +2
Query: 17 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 196
S+ +W +D ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD A
Sbjct: 155 SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLA 214
Query: 197 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 376
VL+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+
Sbjct: 215 VLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEG 274
Query: 377 EVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEA 553
+++ +++K+G+NP + +VP SG G + + T W G C IE
Sbjct: 275 KLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEF 324
Query: 554 LDAILPP-ARPTDKPLRLPLQDVY 622
+D +LP R + P+R + + Y
Sbjct: 325 IDVLLPSYKRDFNGPVRCTVAEKY 348
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 88.2 bits (209), Expect = 4e-18
Identities = 52/132 (39%), Positives = 74/132 (56%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 218 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 397
G E QT+EH +LA +GVK + + +NK D E E + ++ E +
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLS 191
Query: 398 KIGYNPAAVAFV 433
G+N A +
Sbjct: 192 LHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 88.2 bits (209), Expect = 4e-18
Identities = 52/132 (39%), Positives = 74/132 (56%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAAT 142
Query: 218 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 397
G E QT+EH +LA +GVK + + +NK D E E + ++ E +
Sbjct: 143 DGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLS 191
Query: 398 KIGYNPAAVAFV 433
G+N A +
Sbjct: 192 LHGFNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 84.6 bits (200), Expect = 5e-17
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 146
Query: 218 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 391
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 147 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 196
Query: 392 IKKIGY 409
+ + GY
Sbjct: 197 LNEFGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 84.6 bits (200), Expect = 5e-17
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 218 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 391
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 392 IKKIGY 409
+ + GY
Sbjct: 198 LNEFGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 84.6 bits (200), Expect = 5e-17
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 217
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAAT 147
Query: 218 TGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY 391
G QTREH LLA +GV ++V +NK+D E P +E R E ++ ++
Sbjct: 148 DGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQ 197
Query: 392 IKKIGY 409
+ + GY
Sbjct: 198 LNEFGY 203
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 53.2 bits (122), Expect = 1e-07
Identities = 35/98 (35%), Positives = 49/98 (50%)
Frame = +2
Query: 35 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 214
+LDKL+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAA 135
Query: 215 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 328
G QT + LAF + Q+I +NK+D
Sbjct: 136 NQG-------VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 44.0 bits (99), Expect = 9e-05
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Frame = +2
Query: 119 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 298
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 299 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY--NPAAVAFVPISGWHGDNMLE 469
++I+ +NK D E + + E K+V +K +G N V G+ + ML+
Sbjct: 127 RVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQ 181
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 43.6 bits (98), Expect = 1e-04
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 68 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 244
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 245 KNGQTREHALLAFTLGVKQLIVGVNKMD 328
QT + A V QL+V VNK+D
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNKID 267
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.9 bits (94), Expect = 4e-04
Identities = 34/107 (31%), Positives = 46/107 (42%)
Frame = +2
Query: 8 VKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 187
V+G +D + ER+RGITI A + + IID PGH DF +
Sbjct: 77 VRGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVL 136
Query: 188 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 328
D AVL++ G G G+ T L + + I VNKMD
Sbjct: 137 DGAVLVL-CGVG----GVQSQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 35 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 214
V D L ERERGIT+ A + + + +ID PGH DF + D V+++
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDG 123
Query: 215 GTG 223
G
Sbjct: 124 SAG 126
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 116 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 295
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 296 KQLIVGVNKMDSTEPPYSEPRFEEI 370
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 11 KGSFKYAWVLDKLKAER 61
KGSFKYAWVLDKLK +
Sbjct: 51 KGSFKYAWVLDKLKVTK 67
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 208
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 38 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 208
+D + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 321 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 193
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 41 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 205
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
Query: 206 VAAGTG 223
V A G
Sbjct: 232 VDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 41 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 205
D L E++RG +I I + Y + IID PGH +F M AD V++
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
Query: 206 VAAGTG 223
V A G
Sbjct: 107 VDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +2
Query: 125 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 304
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 305 IVGVNKMDSTEPPYSEPR 358
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 74 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 223
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 74 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 223
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 384 PHTSRRLATTQLLSLSCPFLD 446
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 384 PHTSRRLATTQLLSLSCPFLD 446
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 384 PHTSRRLATTQLLSLSCPFLD 446
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 384 PHTSRRLATTQLLSLSCPFLD 446
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 29.1 bits (62), Expect = 2.7
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +2
Query: 149 DFIKNMI-TGTSQADCAVLIV--AAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGV 316
DF+ MI +G Q D IV + G+ E ++G R + + TLG ++ ++
Sbjct: 445 DFLAQMIQSGAVQLDENYRIVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEK 504
Query: 317 NKMDSTEP---------PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH-GDNML 466
D EP P EP +EEI + Y + + P + PI H +
Sbjct: 505 ELSDLDEPEFVGIMHGYPKQEPVYEEIINQDMRYNNEDPHIPPEIEQFPIQAVHLEEPKF 564
Query: 467 EPSTKMPWFKGWQVER 514
+P + M +G +R
Sbjct: 565 DPISSMNIGRGTLAQR 580
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 29.1 bits (62), Expect = 2.7
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +2
Query: 149 DFIKNMI-TGTSQADCAVLIV--AAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGV 316
DF+ MI +G Q D IV + G+ E ++G R + + TLG ++ ++
Sbjct: 470 DFLAQMIQSGAVQLDENYRIVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEK 529
Query: 317 NKMDSTEP---------PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH-GDNML 466
D EP P EP +EEI + Y + + P + PI H +
Sbjct: 530 ELSDLDEPEFVGIMHGYPKQEPVYEEIINQDMRYNNEDPHIPPEIEQFPIQAVHLEEPKF 589
Query: 467 EPSTKMPWFKGWQVER 514
+P + M +G +R
Sbjct: 590 DPISSMNIGRGTLAQR 605
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 3.6
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -2
Query: 304 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 146
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 145 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 26
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 119 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 214
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,783
Number of Sequences: 27780
Number of extensions: 343092
Number of successful extensions: 1074
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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