Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3984
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.4  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   4.5  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.9  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.9  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = +2

Query: 50  RCSNLRRVPIFLMKYVQQLFTIDFHGEGITSCNKNQTRKIIICVITGGRTSC 205
           RCS +         ++   F+   HG+GI     + +R ++  +      SC
Sbjct: 220 RCSKINITGSVFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 238 YFCREAVMRFGLKGGAAVVSILETLQLIPQ 327
           YF   ++M+FG   G+A +  L T QL P+
Sbjct: 406 YFVLYSIMQFGFSVGSAPLVSLATKQLHPK 435


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 283 PHPSNRNALLLHGRNRQGGGTYP 215
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 149 KNQTRKIIICVITGGRT 199
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 223 YHHPAYFCREAVMRFGLKGGAAVVSILETLQLIPQ 327
           +  P+ F  E V+   L GG AVV +  TL+ I Q
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQ 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,751
Number of Sequences: 5004
Number of extensions: 45360
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)