Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3984
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394...    28   3.4  
01_06_1749 - 39636951-39638102                                         28   3.4  
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345...    28   4.5  
08_02_0682 + 20018879-20019226,20019324-20019656                       27   7.9  

>04_03_1041 -
           21938347-21938529,21938618-21938773,21939291-21939408,
           21939536-21940203,21941773-21941802
          Length = 384

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 358 KHLQRKCATYLEV*VV-RSQVYLQRLPHPSNRNALLLHG 245
           +H+   C T LEV  + R  +YLQ + HP  +N L+LHG
Sbjct: 194 EHITTVC-TLLEVLELNRCSLYLQEITHPKLKN-LVLHG 230


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 305 SSILTTAAPPFKPKRITA 252
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>07_03_1692 - 28733184-28733980,28734306-28734373,28734481-28734594,
            28734835-28734884,28735012-28735422,28735534-28735610,
            28736083-28736257,28736843-28736939,28737070-28737833,
            28737900-28738001,28738093-28738174,28739004-28739161
          Length = 964

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 305  RPYNLYLKVGGAFTL*MFMGSSNHLTSGGL*ARPLI*AIKKKKKNSRGGPVPNSPYSES 481
            RP   Y+K  G  +L    GSS+  T      +P +   +++  N+ GG V  +   ES
Sbjct: 883  RPLENYMKQNGLTSLAGEQGSSSTCTGAATVPQPALVESEERTSNNDGGRVATAEQPES 941


>08_02_0682 + 20018879-20019226,20019324-20019656
          Length = 226

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 320 ISCKVSSILTTAAPPFKPKRITA 252
           +SC+V++    AAPP + +R+TA
Sbjct: 28  VSCRVAATAAAAAPPPQGRRLTA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,103
Number of Sequences: 37544
Number of extensions: 335827
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)