Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3984
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   3.1  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   3.1  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   3.1  
X59156-8|CAB56746.1|  103|Caenorhabditis elegans transposase pro...    28   4.1  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   9.4  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   9.4  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 472 IGRIGYRAPPRVFFFFFY 419
           IG  G+ APP VF FFF+
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 472 IGRIGYRAPPRVFFFFFY 419
           IG  G+ APP VF FFF+
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 286 AVVSILETLQLIPQGRWRIYVVDVYGLQ*PLNIRW 390
           +V+  + ++QLI     RI+   VYG++ P+N+ W
Sbjct: 211 SVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>X59156-8|CAB56746.1|  103|Caenorhabditis elegans transposase
           protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 291 NGCPTLQTETH-YCFTAEIGRVVVPTRAD-SQEVLPPVITQIIILRV*FLLHDVIPSPWK 118
           N C   Q   H +C   ++    VP++   S++  P    Q+I   +      + P+  +
Sbjct: 13  NCCIHFQIFEHSFCCITDMASECVPSQKSFSKKRRPDDSVQVIFCHLIVEKRSITPAQLQ 72

Query: 117 SIVNNCCTYFIRKIGTR 67
           +++ +C  +F+R  GTR
Sbjct: 73  TVLESCGNFFVRS-GTR 88


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 265 NALLLHGRNRQGGGTYPCG 209
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 265 NALLLHGRNRQGGGTYPCG 209
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,509,087
Number of Sequences: 27780
Number of extensions: 269729
Number of successful extensions: 544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)