Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3983
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ...    26   2.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   3.5  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    25   3.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   6.1  

>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 243 VFKWAAKKSKDF 278
           +F WAAK+SKDF
Sbjct: 7   LFSWAAKRSKDF 18


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 205 VTLSNNLCNRNIS--LW-IQCSDYFRYMQMIFHIFINNC 98
           +++SNN  +  +S  LW +     FR++  IF++FI  C
Sbjct: 818 ISISNNETSAYLSFLLWSVVAFSVFRFIGCIFYLFIRLC 856


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -1

Query: 383 INKLMIDLIVMKHFFYSEHTWTQKKYGKLGKV*IHEI 273
           I++ +I        F+S+  +T  +Y K+G + +HE+
Sbjct: 125 IHRFLIAGFTAASKFFSDVFYTNSRYAKVGGIPLHEL 161


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 199 LSNNLCNRNISLWIQCSDYFRYM 131
           L +N  NRN   W+   +Y R+M
Sbjct: 402 LDSNSSNRNSKWWVPYLEYVRFM 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,850
Number of Sequences: 5004
Number of extensions: 23217
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)