Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3983
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   9.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 181 NRNISLWIQCSDYFRYMQMIFHIF 110
           N  + +W+ CS +F   Q  FH +
Sbjct: 410 NAGMWMWLSCSSFF---QQFFHCY 430


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 166 LWIQCSDYFRYMQMIF 119
           +W++   +F YM++IF
Sbjct: 157 VWVELLKHFNYMKVIF 172


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 175 FGCIGYWKVSQ 207
           F CIGY+K+++
Sbjct: 68  FSCIGYYKLNK 78


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 270 YFFWRPI*KRLIKDNIILQ*FL*HF 196
           +  W    K  +KDNI+ Q F+  F
Sbjct: 102 HILWTSYKKVFMKDNILRQYFITFF 126


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 270 YFFWRPI*KRLIKDNIILQ*FL*HF 196
           +  W    K  +KDNI+ Q F+  F
Sbjct: 85  HILWTSYKKVFMKDNILRQYFITFF 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,329
Number of Sequences: 438
Number of extensions: 1539
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)