Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3982
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    55   1e-08
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    28   1.5  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    26   6.2  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   8.2  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    25   8.2  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%)
 Frame = +2

Query: 272 ERVLCYEPDPTKAKVLYDSKVLEVVESKDKRGRRTVEYLIHFQGWNSSWDRCVSEDFVLK 451
           ERVLC+        +LY++K+++     + +G  T  YLIH++GW +SWD  V +D +L+
Sbjct: 9   ERVLCFH-----GPLLYEAKIVDT----EMKGDVTT-YLIHYKGWKNSWDEWVEQDRILQ 58

Query: 452 DTEENRQLQRDL 487
            TEEN + Q++L
Sbjct: 59  WTEENLKTQKEL 70


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 644  RLRLAGYLSKSRRR*SHDGCAWRAPPRRRLYYHPSFV 534
            R   +GY +   +R SH+GC         +Y HPS V
Sbjct: 1051 RALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGV 1087


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 300 GSGS*HRTRSPSVNLYRSPRVETIVN*CLAQNRWELNKITPFNKCDG 160
           G+G   +   P  N Y +P    + +  +  +   L ++TPF K DG
Sbjct: 525 GAGLPSKGYDPGSNTYVAPSSVNVKDVAIDPHSKRLQRLTPFKKWDG 571


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 20  NNSTVPLILLLHTTTWSHSDVRNQLISLGYYRSLF 124
           ++ST P   L    +W HS +   L +L + R LF
Sbjct: 155 SSSTDPAFELKEDQSWKHSSILRPLETLNFKRFLF 189


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = +2

Query: 149 LQI*PSHLLNGVILLSSHRF---WARHQLTMVSTRGLRYKFTEGERVLCYEPD--PTKAK 313
           L + PS  +    LL S +    W RH   + +   L  K T  E V  ++PD      K
Sbjct: 140 LLVCPSEDIKNDFLLDSLKHALHWDRHAKVVCTAIQLLVKVTGAEAVFAFQPDFFEQSLK 199

Query: 314 VLYDSKVLEVVES 352
           +L D    + + S
Sbjct: 200 LLKDYSYAQAISS 212


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +3

Query: 273 NESCATSQTLLKPRCF---MIPRFLKS*RAKTNEGVELLSI 386
           N + +T   +L   C+   +IP+ +K+ RAK+ EG++ L I
Sbjct: 15  NATASTVFAILGTVCWCVQLIPQIIKNYRAKSTEGLDTLFI 55


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 449 KDTEENRQLQRDLAEKSQLQLGAYLYRRER 538
           K  E N++L +DL E SQLQ   Y Y   R
Sbjct: 34  KALEGNKELNKDLQEDSQLQKD-YKYDESR 62


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 415 RRVPSLEMD*ILNSSTPSFVFALYDFKNLGIIKHLGFSRVWL 290
           +R+PS +   IL      FV  +   +N G  K +G  +VWL
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWL 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,108
Number of Sequences: 5004
Number of extensions: 53453
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)