Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3979
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    31   0.25 
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   5.3  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.0  

>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 41  NREKFVSHECEASVQFQR*PFKTARNSYIAHTVL*HYLYKLCNFSG 178
           N + FV +  +A    QR  FKT  N  +A ++L  Y+Y   N+ G
Sbjct: 263 NNDSFVQNYGKALQHIQR-AFKTRNNDPVASSILERYVYSKKNYEG 307


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 302 IYIKESRVSYTIYNSGTAELI 364
           ++ +E R+SYT+Y +G   L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 488 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 366
           C   S+  C   F+  S  + +   S+ C SP   LPPH  S+
Sbjct: 19  CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,639
Number of Sequences: 5004
Number of extensions: 69785
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)