Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3979
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    30   1.8  
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977     28   7.3  

>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 461 YTTFYVASHGNVI--KSILCPSPGFTLPPHQFSAKSVQ 354
           Y T +V   G  I  K+   P+P  TLPP Q+S  S++
Sbjct: 146 YCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSIE 183


>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
          Length = 614

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 630 MCNN---GGLLTV*YLWKVHKCGKMKQSCWT*LSRVPP 734
           +CN+   G   T+  L + H C K+K++C+T LS + P
Sbjct: 289 LCNHIDTGSASTMLVLAEKHHCCKLKEACFTFLSSMSP 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,919,472
Number of Sequences: 37544
Number of extensions: 383883
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)