Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3979
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 522 YNILRLAVSCVLLFHISCVL--LYHVLCRVPRERYKKYPMSFSWFYATSSPIF 370
           + I+ LAVSC++LFH +  L  L+ +   +  E   ++  S   +Y    P+F
Sbjct: 173 FKIILLAVSCIVLFHWNACLYFLFSLYEGITEESQTEFGFS---YYKVFEPVF 222


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 112 SCFKRSSLKLYRRLAFVRDKFFSIRQTRIWFSFNISV 2
           S +  SS +++R L  V D F    QT+ WF + I +
Sbjct: 251 SYWNPSSFEVWRMLGMVEDSFEITIQTKKWFEYPIDL 287


>Z66523-9|CAE17856.1|  271|Caenorhabditis elegans Hypothetical
           protein M05D6.9 protein.
          Length = 271

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 495 CVLLFHISCVLLYHVLCRVPRERYKKY-PMSFS 400
           C+L F I  +  + V  R+PR RY+K  P  FS
Sbjct: 4   CLLTFFILILFSFLVESRIPRARYRKRGPTGFS 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,211,069
Number of Sequences: 27780
Number of extensions: 386066
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)