Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3979
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 416 ILCPSPGFTLPPHQF 372
           +LCP+ GF +P H++
Sbjct: 232 LLCPAQGFPVPVHRW 246


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 497 VAFCYSISVAFCYTTFYVASHGNVIKSILCPSPGFTLPPHQFSAKSVQPFL 345
           +A C ++  A  +   Y   +G+VI      S  +TL  H F   ++  F+
Sbjct: 181 LALCLAVPQAIQFGVVYENKNGSVILDTARCSMKWTLIEHAFEISTMLFFV 231


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -1

Query: 501 VSCVLLFHISCVLLYHVLCRV 439
           VS  + F++ C+++  + CR+
Sbjct: 195 VSSSISFYVPCIVMLGIYCRL 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,110
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)