Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3978
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.6  
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.3  
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.3  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 138 FTPRYVTHKREDAEVQYCLSSSFNW 212
           F   ++  K  DA + YCLS  FNW
Sbjct: 288 FWQSFLAPKFFDAVLAYCLSQLFNW 312


>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 383 KNEITVSTTKSQIVCYLKLIRKCYRCLHV 469
           KN I  STT  +   Y   +RKCY CL +
Sbjct: 73  KNPIESSTTSHKKKGY---VRKCYECLQI 98


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 293 LNGHFLHTETVFLTSTLHNCNYYI 222
           L   F   ET+F   +LH C YY+
Sbjct: 71  LKTSFDSNETIFFLYSLHRCVYYL 94


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 290 NGHFLHTETVFLTSTLHNCNYYIHKQP 210
           +   LH E  F+ +  +N N +I KQP
Sbjct: 29  SSRILHFEEAFVINETNNINQFIPKQP 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,927
Number of Sequences: 5004
Number of extensions: 48083
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)