Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3973
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.6  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.4  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   9.7  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 190 EVHGRR*PLTIRWAVCSFSYKGNKKKVFHFGPLLHDTITASISFLCSFLNSYNY 351
           ++   R   TIR A+ S  Y  + K+  HF   +   I   I  L S   S +Y
Sbjct: 459 DIFSNRNHATIRSALFSQRYPSHSKRHIHFNDRVQQCIAVDIDSLPSDSESASY 512


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 172 SAPGIAEVHGRR*PLTIRWAVCSFSYKGNKKKVFHFG 282
           S+P  + +H           VC  SY+GN+KK  + G
Sbjct: 34  SSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNG 70


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 303 DGVMQQWTKVKNLFFIALIGKRANGPPDGEWLPSPMDFSNARS 175
           +G+     K  ++ ++ L  K  NGPP  + LPS    SN ++
Sbjct: 208 NGLASYGEKASDVRYVCLFCKAWNGPPIDKSLPSSEMDSNLQT 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,597
Number of Sequences: 5004
Number of extensions: 50517
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)