Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3973
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 309 CRDGVMQQWTKVKNLFFIALIGKRANGPPDGEWLP 205
           CR+  ++     +N+    LIG R   PP  +W P
Sbjct: 391 CRE--VEAAATARNVVAPFLIGSRRTSPPPEDWKP 423


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 416 QIVEFLL*NFVLNYSRTSFSSEGSLKKLIIGHSGSDSEKPQSTDTTLSAVSS 571
           Q  E L    +L Y      S    KKL++  S + S+ P+S D + ++ +S
Sbjct: 51  QEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTS 102


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 464 FVNNLIRSFIIRIQQSVSCC 405
           F+N+  + FI  IQ+++ CC
Sbjct: 127 FLNSESKDFIDFIQKNLQCC 146


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 472 FVGGIPKKTYN 504
           F GG P KTYN
Sbjct: 565 FTGGDPMKTYN 575


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 228 PPDGEWLPSPMDFSNA 181
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,587
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)