Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3967
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   206   1e-54
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   206   2e-54
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.65 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.1  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   1.5  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.5  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.5  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   6.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   8.1  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   8.1  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  206 bits (504), Expect = 1e-54
 Identities = 100/155 (64%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
 Frame = +3

Query: 24  NSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTG 203
           +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG
Sbjct: 3   HSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTG 62

Query: 204 RVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAA 383
            VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA 
Sbjct: 63  VVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQ 122

Query: 384 GKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 485
           GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 123 GKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  206 bits (503), Expect = 2e-54
 Identities = 100/155 (64%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
 Frame = +3

Query: 24  NSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTG 203
           +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG
Sbjct: 3   HSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTG 62

Query: 204 RVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAA 383
            VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA 
Sbjct: 63  VVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQ 122

Query: 384 GKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 485
           GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 123 GKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -1

Query: 458 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 294
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 293 TDIDALRYN 267
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 130 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVS 17
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+S
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLS 780


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = -1

Query: 212 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 33
           + + C   V    H  +  T+   V    N +H++   ERNS+       E      A  
Sbjct: 83  IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNSTSNFVDRIEFSDLELATI 142

Query: 32  LGVRLFE 12
           LG+  FE
Sbjct: 143 LGIHAFE 149


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 389 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 225
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 89  YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 193
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 284 DALRYNPSANTLVDNHTES 228
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 315 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 410
           K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 369 EAKAAGKTVNLKRQPAPPKAAHIVSGT 449
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 277 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 456
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 457 P 459
           P
Sbjct: 115 P 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,701
Number of Sequences: 5004
Number of extensions: 47932
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)