Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3962
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    32   0.37 
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    31   0.86 
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    30   1.1  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   2.0  
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    28   4.6  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   4.6  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   4.6  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = +2

Query: 395 AKSSEIPDAEAKSADIKVEEPAAQPE---DSKTEVQAT-VAEISKEEKPSATDAEGSADS 562
           A+ ++  DAE  + +     P   P+   D K + + T   E S E+ P+A  +E S ++
Sbjct: 343 AEVTKPDDAEPSAPENATSSPTTVPQVRKDEKIDQKPTETTEKSTEKLPAAEISENSTEA 402

Query: 563 AAIIPNMVKKNR 598
           AA   N  +KN+
Sbjct: 403 AAAATNSTEKNQ 414


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 398 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATD 541
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 446 VEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKK 592
           VEEP   P   KT +    A  +    PSA  + GS+   +   N +KK
Sbjct: 235 VEEPIPPPNTRKTLLGEPPAGAASSSSPSAQSSTGSSTGTSSYQNNIKK 283


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 395 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 556
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A   E  A
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEA 74


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 428 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKNRL 601
           KSA  K+  P+ + ED++ T+  A+  E S + KP  T  E SAD    + ++  + +L
Sbjct: 66  KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESISSQQQL 123


>Z83239-9|CAB05811.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 464 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKN 595
           + E+ + E+Q   A+ S+ E PS++    S+DS +      KKN
Sbjct: 24  EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKN 67


>Z81099-4|CAB03189.1|  517|Caenorhabditis elegans Hypothetical
           protein K08F9.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 464 QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKN 595
           + E+ + E+Q   A+ S+ E PS++    S+DS +      KKN
Sbjct: 24  EEEEEEEEIQPGPADSSESENPSSSSDSSSSDSDSDSDAAPKKN 67


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +2

Query: 398  KSSEIPDAEAKSADIKV--------EEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS 553
            K SEIPD +     +KV        E+P + PE+S+ E       ++K++K      + S
Sbjct: 2869 KGSEIPDEDENGESVKVMKRKEYQIEKPQSMPEESEDE---EFKLLTKKKKMGVIANDPS 2925

Query: 554  ADSAAIIPNMVKK 592
             D + II    KK
Sbjct: 2926 NDGSEIIKMSKKK 2938


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = +2

Query: 275 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 454
           +++  PA  EA   D A  ++  A                A SS +P+     A    E 
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562

Query: 455 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 577
           PA  P   +T   A  AE +    P+A +   +A +A   P
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETP 603


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 128 VSLAMPVAEEKDVVPAQPIL 187
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 128 VSLAMPVAEEKDVVPAQPIL 187
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 401 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEG-SADSAAIIP 577
           +S  P + + +     +EP  Q   +     A  A     E  SAT A G + DSA    
Sbjct: 725 ASSDPSSSSTTTTTITKEPPTQSASASGAAAAAAASAQPSESSSATAASGDNGDSAQNSS 784

Query: 578 NMVKKN 595
           +  KKN
Sbjct: 785 STPKKN 790


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 128 VSLAMPVAEEKDVVPAQPIL 187
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 128 VSLAMPVAEEKDVVPAQPIL 187
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 407 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 547
           E  + E +  + K+EEPAA+ E+ + E +    E   EE+    + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 414 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 515
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,744,006
Number of Sequences: 27780
Number of extensions: 171104
Number of successful extensions: 637
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)