Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3961
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 1.9
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 2.6
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 2.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 3.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 4.5
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 5.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 7.8
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 7.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -2
Query: 401 PDAASSARLPPRWTGVRCRSGSSLSPSQPFRQLESIDLSSKTWVSNP 261
P + SSA LP + S SSLS S P LSS T S P
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQP 187
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 1.9
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +2
Query: 242 PEGLVLPDY*PRSCLTNQ*TRAVGMAETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 421
P V P+Y P + + + G +TD T P G GP T + PA I
Sbjct: 294 PSITVPPNYIPNTAMMGPSYSSFG--DTDPRTYPAGMGPNPTAARNGFYPPTPAQIHQLK 351
Query: 422 REMERRKRVQALMS 463
+ + +R MS
Sbjct: 352 AQQQHLQRQSKQMS 365
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 298 DSSCRNG*DGLRDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGT-PEARPSSH 459
+ C +G LR P P H+ + G+ R P NGT P+ +P H
Sbjct: 367 EEHCHHG-KFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKH 420
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 331 RDDPERHRTPVHRGGRRALEAASGRHRRRCPRNGT-PEARPSSH 459
R P P H+ + GR R P NGT P+ +P H
Sbjct: 294 RPIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKH 337
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 468 FEDMRAWTRFRRSISRTSASMSAGRCFK 385
F+DMR +TR R+SI S + A + F+
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLFR 136
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 441 FRRSISRTSASMSAGRCFKRSSSSSVDRGPVPFG 340
FR+SIS++ +S + CF+ + P+ FG
Sbjct: 3 FRKSISKSPSSKGSTVCFRCGQAFQRRETPISFG 36
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 368 EEEDERLKQRPADIDADVREMERRKRVQALMSSKLF 475
EE++E + + D+ D + ME +R+ + +++LF
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLF 552
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 197 DDHYTQNSHTNLNGDRNRH 141
DDH +Q+ HT+ N + H
Sbjct: 524 DDHVSQHEHTHENSQEHHH 542
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 257 ARVLQESCTVQQMARRSDKLDDHYTQNSHTNLNGDRNRH 141
A V Q+ C ++ + +D+ YTQ+ NL+ +N+H
Sbjct: 270 AYVDQDPCHIRVLNANTDQSLILYTQSDVKNLHFGKNKH 308
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 341 PNGTGPLSTEEEDERLKQRPADIDADVR 424
P+ TG L EEEDERL D DVR
Sbjct: 406 PDLTGHL--EEEDERLNDEYLDKAVDVR 431
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 302 ESIDLSSKTWVSNPVARVLQESCTVQQMARRSDKLDDHYTQNSHTNLNGDR 150
E+ID K W + A++L + + + + K+ +T N+HT N R
Sbjct: 377 ETID-RRKLWTNEEEAKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQR 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,305
Number of Sequences: 5004
Number of extensions: 38538
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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