Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3961
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-relat... 39 0.002
AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-relat... 39 0.002
AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin prote... 39 0.002
AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin prote... 39 0.002
AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin prote... 39 0.002
AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin prote... 39 0.002
AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin prote... 39 0.002
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 29 2.3
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 28 3.1
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 28 3.1
AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical ... 27 7.0
AL034488-8|CAE46690.1| 395|Caenorhabditis elegans Hypothetical ... 27 9.3
AL034488-7|CAA22452.1| 396|Caenorhabditis elegans Hypothetical ... 27 9.3
>AF166168-1|AAD49857.1| 679|Caenorhabditis elegans adducin-related
protein protein.
Length = 679
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF166167-1|AAD49856.1| 732|Caenorhabditis elegans adducin-related
protein protein.
Length = 732
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF039043-6|AAP82653.1| 718|Caenorhabditis elegans Adducin protein
1, isoform e protein.
Length = 718
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF039043-5|AAK70639.1| 732|Caenorhabditis elegans Adducin protein
1, isoform b protein.
Length = 732
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF039043-4|AAL32219.1| 702|Caenorhabditis elegans Adducin protein
1, isoform c protein.
Length = 702
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF039043-3|AAM54181.1| 682|Caenorhabditis elegans Adducin protein
1, isoform d protein.
Length = 682
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>AF039043-2|AAK70638.1| 679|Caenorhabditis elegans Adducin protein
1, isoform a protein.
Length = 679
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 392 QRPADIDADVREMERRKRVQALMSSKLF 475
QRPA I D+ EMERRKRVQ ++ SK F
Sbjct: 27 QRPAVIKEDLSEMERRKRVQQILESKSF 54
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 59 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 205
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 231 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 281
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +2
Query: 59 RCLLS*CCKNYKENDKCVFLQI*CFVLSACYDRRSNLCVN--FVCSDHLIC 205
RC CK++ + C +Q C + + S+ C+N FVC L C
Sbjct: 233 RCDAEVDCKDHSDEKNCTAIQHTCKLAEEFACKASHNCINKAFVCDGELDC 283
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 297 RLELSEWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASK 452
R E+ E R R + T P P R++++ + P+ KWN G+AS+
Sbjct: 876 RDEIHEIQSRRSRANSTGRSPYPKRKESARGAGAPKGPPPVQHKWN-GNASQ 926
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 297 RLELSEWLRRTQRRSRTAPDPCPPRRKTSA*SSVRPTSTPMSAKWNAGSASK 452
R E+ E R R + T P P R++++ + P+ KWN G+AS+
Sbjct: 876 RDEIHEIQSRRSRANSTGRSPYPKRKESARGAGAPKGPPPVQHKWN-GNASQ 926
>AC024751-4|AAK21505.1| 425|Caenorhabditis elegans Hypothetical
protein Y18H1A.1 protein.
Length = 425
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 395 AASSARLPPR--WTGVRCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVARVLQESCTVQQ 222
+ +A PP+ +G + + +LS S P S+ + WV VA+ +S +
Sbjct: 68 STENAFQPPKDLISGRKPKGAPNLSGSVPLSHKSSLTGGADKWVGEAVAKNWMDSIDTAE 127
Query: 221 MARRSDKL 198
+ + DKL
Sbjct: 128 VKKEYDKL 135
>AL034488-8|CAE46690.1| 395|Caenorhabditis elegans Hypothetical
protein Y54G11A.8b protein.
Length = 395
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 224 QMARRSDKLDDHYTQNSHTNLNGDRNR 144
QM+R D HYTQN +L D NR
Sbjct: 360 QMSRSGDDRVRHYTQNFLNDLEKDINR 386
>AL034488-7|CAA22452.1| 396|Caenorhabditis elegans Hypothetical
protein Y54G11A.8a protein.
Length = 396
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 224 QMARRSDKLDDHYTQNSHTNLNGDRNR 144
QM+R D HYTQN +L D NR
Sbjct: 361 QMSRSGDDRVRHYTQNFLNDLEKDINR 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,026,722
Number of Sequences: 27780
Number of extensions: 236454
Number of successful extensions: 881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -