Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3961
         (480 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   9.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   9.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   9.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   9.1  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 109 ALIVLFIIFTALA*QTPHVQALF 41
           ALI + I+ TAL   T  +  LF
Sbjct: 445 ALITMLIVLTALGLPTNDISLLF 467


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 364  HRGGRRALEAASGRHRRRCPRNGTPEARP 450
            H G R ++   S    R  P +G+PE  P
Sbjct: 1833 HYGSRGSVGRRSVGSARNIPVSGSPEPPP 1861


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 328 LRDDPERHRTPV 363
           +R+D ER+R+PV
Sbjct: 328 MRNDSERNRSPV 339


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 317 AETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 421
           A++D  T+P   G   T  +  R  +   D D ++
Sbjct: 131 ADSDVTTLPTLIGKNETSTQSSRSVESVEDFDNEI 165


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 317 AETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 421
           A++D  T+P   G   T  +  R  +   D D ++
Sbjct: 179 ADSDVTTLPTLIGKNETSTQSSRSVESVEDFDNEI 213


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 317 AETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 421
           A++D  T+P   G   T  +  R  +   D D ++
Sbjct: 179 ADSDVTTLPTLIGKNETSTQSSRSVESVEDFDNEI 213


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 317 AETDSETIPNGTGPLSTEEEDERLKQRPADIDADV 421
           A++D  T+P   G   T  +  R  +   D D ++
Sbjct: 179 ADSDVTTLPTLIGKNETSTQSSRSVESVEDFDNEI 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,865
Number of Sequences: 438
Number of extensions: 2542
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)