Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3959
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    27   1.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   1.7  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   2.3  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   2.3  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   3.0  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   5.3  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.0  

>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 207 WVLKKLVSNLTKLESQLTLKKIVL*SPVTVAGSESYFLFPVL 332
           ++LK+ ++    LES + L  +++     V+G E   LFPV+
Sbjct: 245 FLLKQQLTAFIILESSIILHSVIIGLTTAVSGEEFKTLFPVI 286


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 174 LGILRMEISVKWVLKKLVSNLTKLESQLTLKKIVL*SPVTVAGSESY 314
           L +  +E SV+ +L  ++ +L  L ++LTLK  V+  P  +   +SY
Sbjct: 326 LPVKSVESSVQALLFMVLPHLHTLVNELTLKLFVVIPPAIILSFDSY 372


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 48  EYSRALIYNFFFCNVWITQN--YTKFKIS*EKLYAIGLLAINSMLGILRMEISVKWVLKK 221
           +Y  +L + F F   +I  N  YT F    EK   +GLL  +  LG L    S+      
Sbjct: 349 DYGMSLFHLFLFA-AFIRNNSLYTSFNFITEKPVIVGLLLFSDALGPLS---SILTFASN 404

Query: 222 LVSNLTKLESQLTLKKI 272
            VS L + ++    K++
Sbjct: 405 KVSRLCEYQADAFAKQL 421


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 93  WITQNYTKFKIS*EKLYAIGLLAINSMLGILRMEISVKWVLKKLVSNLTKLES 251
           W T  Y  F    E+LYA G  + N+ L      +++  + K+L ++ T  ES
Sbjct: 178 WPTFVYNDFMYEFERLYAFGFHSNNAWLISFYSILALSSIRKRLGNSKTLAES 230


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 92  NVTEKKIVNQCSRIFERKKKKKNSRLVRSL 3
           ++TE+KI+N+C + +     K +S L++SL
Sbjct: 231 SLTEQKIINECPQ-YPETLSKNSSSLLKSL 259


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 267 FLKSIDFLIWLGLRPIFLKPTLQ 199
           FL    F+ +L + PIF+KPT Q
Sbjct: 502 FLGPSVFIAYLLISPIFVKPTFQ 524


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 204 KWVLKKLVSNLTKLESQLTL 263
           K V K+LVS LTKL   +TL
Sbjct: 900 KLVGKRLVSELTKLSGNITL 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,361
Number of Sequences: 5004
Number of extensions: 37413
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)