Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3959
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938...    27   9.1  
02_04_0148 - 20198407-20201424                                         27   9.1  

>07_03_1298 -
          25592788-25592890,25593126-25593229,25593747-25593808,
          25593957-25594065,25594215-25594355,25594707-25594769,
          25594974-25595084,25596140-25596457
          Length = 336

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 89 VTEKKIVNQCSRIFERKKKKKN 24
          V+  ++V  CSR+  +KKKKK+
Sbjct: 27 VSRSRVVEGCSRVSLKKKKKKS 48


>02_04_0148 - 20198407-20201424
          Length = 1005

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 280 NHRSQWPGPKAISCFLFFIRKATVSCRHGNRIVVSXXXXXXLEGG 414
           NHR      ++  CFL F R  +   R G+++ V       L GG
Sbjct: 402 NHRGSSSSAESGECFLAFARVFSGVLRAGHKVFVLSPMYDPLRGG 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,131
Number of Sequences: 37544
Number of extensions: 211800
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)