Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3959
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical pr...    30   0.67 
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    28   2.7  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    28   2.7  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    28   2.7  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      28   2.7  
U58755-14|AAB00703.1|  117|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    27   6.2  

>Z81595-2|CAB04749.1|  527|Caenorhabditis elegans Hypothetical
           protein T22H2.2 protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +3

Query: 51  YSRALIYNFFFCNVWITQNYTKFKIS*EKLYAIGLLAINSMLGILRMEISVKWVLKKLVS 230
           Y   + Y+ +  + W   +Y K      KL  +  L  +  L +L  E   KW LK   +
Sbjct: 273 YIGDISYSLYLIH-WPIYSYWKLTYEGNKLLLVAALLCSIFLAVLVFETVEKWYLKLTST 331

Query: 231 NLTKLESQLTLKKIVL 278
            L +L   L    IVL
Sbjct: 332 KLARLVVLLFALNIVL 347


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 173 ARNFTNGNICKVGFKKIGLKPNQIRKSI 256
           A++F+ G   K+ FK  GLKP    KS+
Sbjct: 385 AQDFSKGLTDKISFKAFGLKPEDATKSV 412


>U64848-7|ABS83846.1|  144|Caenorhabditis elegans Hypothetical
           protein C50E3.11 protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 218 KIGLKPNQIRKSIDFKKNCFIITGH 292
           +I L PN  +K IDF+  C+I+ GH
Sbjct: 85  QICLVPNAKKKLIDFEGICYILYGH 109


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 GNICKVGFKKIGLKPNQIRKSIDFKKNCFIITG 289
           G IC      +GL+PN IR+ + FK    I+ G
Sbjct: 588 GFICSENRYSLGLEPNPIREPVAFKVRKAIVDG 620


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 GNICKVGFKKIGLKPNQIRKSIDFKKNCFIITG 289
           G IC      +GL+PN IR+ + FK    I+ G
Sbjct: 684 GFICSENRYSLGLEPNPIREPVAFKVRKAIVDG 716


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 GNICKVGFKKIGLKPNQIRKSIDFKKNCFIITG 289
           G IC      +GL+PN IR+ + FK    I+ G
Sbjct: 656 GFICSENRYSLGLEPNPIREPVAFKVRKAIVDG 688


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 GNICKVGFKKIGLKPNQIRKSIDFKKNCFIITG 289
           G IC      +GL+PN IR+ + FK    I+ G
Sbjct: 588 GFICSENRYSLGLEPNPIREPVAFKVRKAIVDG 620


>U58755-14|AAB00703.1|  117|Caenorhabditis elegans Hypothetical
           protein C34D4.3 protein.
          Length = 117

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 113 CVILCNPNVTEKKIVNQCSRIFERKKKKKNS 21
           C I  N  V+  KI+N C ++   K K  N+
Sbjct: 12  CPIQANGGVSTHKIINHCDKMLAYKIKSSNN 42


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 174 LGILRMEISVKWVLKKLVSNLTKLESQLTL 263
           L ILR+ + + WVL K ++ ++ L++ L L
Sbjct: 310 LDILRIYMIIGWVLSKFLTRVSHLQAHLNL 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,573
Number of Sequences: 27780
Number of extensions: 210326
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)