Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3958
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    30   1.8  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    29   3.1  
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    29   5.4  
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545...    28   9.4  

>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 435 PRLLRYLNDNCPIKKTTTMRSRSCLNSKLFKW 530
           P++L YL+D C + K T    +S L  K   W
Sbjct: 40  PKVLNYLDDRCRVHKETINLCKSVLQRKSIDW 71


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 17  TQFDVSMGGLIYSPSPSSQVTGSPRSGPMLEVPKSTVNGSAGSVT 151
           T  DVS      S SPS   + +P   P++   K   +GS GS +
Sbjct: 121 TPMDVSPAATTVSSSPSPPASSAPAQEPVVRPSKRVRSGSPGSAS 165


>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 143 SVTTCLRRRRLF--TIRSTGSGMTITTRMPAPSLIFEVHVSVVSQSRFL 283
           S+ TC+ +R +F    R TG G  ++ R+P    + +V V     + F+
Sbjct: 448 SIVTCMTKRTVFYGEYRCTGDGANLSDRVPYAQKLSDVQVLPYLNTSFI 496


>03_06_0220 +
           32452831-32452944,32453618-32453911,32454416-32454503,
           32454596-32454717,32454985-32455142,32455201-32455273,
           32455552-32455640,32455753-32455858,32455967-32456179,
           32456726-32456920,32457051-32457128,32457209-32457523
          Length = 614

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 227 APSLIFEVHVSVVSQSRFLACYSFTMEVFCEHNNNMC 337
           APS+  +  V  V+    L C +  M V C  N  +C
Sbjct: 214 APSIFLDSAVQAVADGGLLMCTATDMAVLCGPNGEVC 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,652
Number of Sequences: 37544
Number of extensions: 379852
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)