Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3958
         (767 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3651|AAN14023.1|  542|Drosophila melanogaster CG31105-P...    33   0.57 
AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX transcri...    32   0.99 
AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA...    32   0.99 
AY058342-1|AAL13571.1|  623|Drosophila melanogaster GH11762p pro...    31   1.3  
AE014298-2074|AAF48401.1|  623|Drosophila melanogaster CG9512-PA...    31   1.3  

>AE014297-3651|AAN14023.1|  542|Drosophila melanogaster CG31105-PA
           protein.
          Length = 542

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 486 TMRSRSCLNSKLFKWREFLNETHI 557
           T+   SCLN  +FKWR  L E HI
Sbjct: 378 TLGHVSCLNQYIFKWRNILTERHI 401


>AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX
           transcription factor protein.
          Length = 897

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  PSSQVTGSPRSGPMLEVPKSTVNGSAGS 145
           PSS  TG P SGPM+ V  ST     GS
Sbjct: 467 PSSDGTGGPGSGPMVSVTSSTAGQLTGS 494


>AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA
           protein.
          Length = 897

 Score = 31.9 bits (69), Expect = 0.99
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +2

Query: 62  PSSQVTGSPRSGPMLEVPKSTVNGSAGS 145
           PSS  TG P SGPM+ V  ST     GS
Sbjct: 467 PSSDGTGGPGSGPMVSVTSSTAGQLTGS 494


>AY058342-1|AAL13571.1|  623|Drosophila melanogaster GH11762p
           protein.
          Length = 623

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 669 HGTKKVVTLESNRQTSPLTFAHKDKKSYNIRA 764
           H   K + L+ N +   +TF H+ KK Y ++A
Sbjct: 273 HAHVKKINLDRNNRAESVTFVHRGKKEYTVKA 304


>AE014298-2074|AAF48401.1|  623|Drosophila melanogaster CG9512-PA
           protein.
          Length = 623

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 669 HGTKKVVTLESNRQTSPLTFAHKDKKSYNIRA 764
           H   K + L+ N +   +TF H+ KK Y ++A
Sbjct: 273 HAHVKKINLDRNNRAESVTFVHRGKKEYTVKA 304


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,593,877
Number of Sequences: 53049
Number of extensions: 677056
Number of successful extensions: 1904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)