Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3958
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 203 MTITTRMPAPSLIFEVHVSVVSQS 274
           +T+TT    PSL+  V ++ V  S
Sbjct: 410 ITVTTDASVPSLVSNVRITSVKSS 433


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 332 YYYYVHKRLP**RSNTQENVIEKQLR 255
           YYYY+ + LP   S++Q + + K++R
Sbjct: 233 YYYYMREMLPYWMSSSQYH-MPKEIR 257


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 332 YYYYVHKRLP**RSNTQENVIEKQLR 255
           YYYY+ + LP   S++Q + + K++R
Sbjct: 233 YYYYMREMLPYWMSSSQYH-MPKEIR 257


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 359 IKFLMKKRTYYYYVHKRLP 303
           + F++K+R  YY  H  +P
Sbjct: 236 VVFVLKRRLGYYLFHTYIP 254


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 178 YHSVHRIGYDHHNANASTLLDI*GSCLSCFS 270
           ++S    G D   A  +TLL I  SC+  F+
Sbjct: 227 FNSAALEGDDQQRAIINTLLSISASCVIAFA 257


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 62  PSSQVTGSPRSGPMLEVPKSTVNGSAGSVTTCLRRRRL 175
           P++  TG+  + P   V  S    +  + TT +  RRL
Sbjct: 229 PAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRL 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,763
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)