Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3955
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   6.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   6.3  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.3  

>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 210 ETSLSALEKNLPSHFSVTRHIFPLRAICFVFMS 308
           E+  SA E  L   + +T+H  P  ++C+ F+S
Sbjct: 164 ESYSSASESPLKPKYRLTKHTQPCTSVCWNFLS 196


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 531 SRKKKKVCVY*CTHVRSETYLWPYFSKNDL 442
           S+++KKV  +   H  S++ LWPY    DL
Sbjct: 364 SQEQKKVVGFLDVHSYSQSVLWPYAYTCDL 393


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 159 NVSLSTYFDKNLRNY*SETSLSALEKNLPSHFSVT 263
           +V L TY  KN  ++ +E +LSA   NL ++ S T
Sbjct: 262 DVDLGTYTVKNRDSWSNEVNLSASTNNLSTNTSGT 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,181
Number of Sequences: 5004
Number of extensions: 54371
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)