Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3954
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    29   0.54 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   6.7  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   6.7  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  

>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 649 PFVYNEIVFGSSVTHRFQDL-TKQLVFQRRPCCTVWRDERIHSG 521
           PFV++   F    TH F+D+  K       P   V+ +ER HSG
Sbjct: 6   PFVHSNANFPPLQTHNFEDIPEKGYTIFSSPRIDVFNEERPHSG 49


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 442  QYECYQDKKYIGTYIFVFISSDNLEEALNEFVRLAKQYSM 561
            + E   ++ Y  ++ F+F   +  ++ +N F  L KQY +
Sbjct: 3372 ELERSNNENYYNSFFFLFEKREQADQFINNFKLLRKQYEV 3411


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  HSPSGGPCARLPTRAIRKKNLSPLYLALPLQKSNQQ 155
           H P   P   LPT++++ + + PL   +P+ +S+ +
Sbjct: 769 HLPKVNPERFLPTKSLKLEEMKPLEEKVPIYRSSSK 804


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 485 IYVPIYFLSW*HSYCT*SFFIYFLLL 408
           + + +YF+SW  +YCT   ++Y  LL
Sbjct: 41  VLISLYFMSWHPNYCT-IVYLYSSLL 65


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 691 FSMV-CAHFIESAITPFVYNEIVFGSSVTHRFQDL 590
           FS+V CA+   S I P V ++  F   +T RFQ L
Sbjct: 244 FSIVLCAYMGNSQIFPLVSSKNCFEEPITPRFQAL 278


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -1

Query: 659 CYYSFRV**NCLRIFRHPSLPRSYKATRVSTASMLYCLARRTNSFRASSKLSLEINTK 486
           C Y F+   N L  ++ PSLP S  AT V  AS L  +     SF     L    + K
Sbjct: 504 CKYPFQFFINKLPFYQSPSLPLS--ATYVWIASALLSVQPGNGSFNIMLSLKFVSSMK 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,507
Number of Sequences: 5004
Number of extensions: 70834
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)